Factsheet for TraesCS5A01G087200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G093100.1	Wheat	plastid	96.04	96.04
HORVU5Hr1G022750.1	Barley	plastid	96.4	92.73
TraesCS5D01G099000.1	Wheat	plastid	98.2	91.0
Os07t0275901-00	Rice	cytosol	20.86	76.32
Os12t0564400-01	Rice	plasma membrane	66.19	73.9
Os07t0275100-00	Rice	endoplasmic reticulum, golgi, vacuole	63.31	69.02
OQU79328	Sorghum	endoplasmic reticulum, plastid	65.11	68.3
GSMUA_Achr3P12740_001	Banana	plastid	57.55	62.26
KRH68425	Soybean	nucleus, plastid	56.47	60.85
Os07t0275801-00	Rice	cytosol, mitochondrion, plastid	17.27	60.0
VIT_14s0060g00850.t01	Wine grape	plastid	51.8	58.06
CDY54970	Canola	plastid	55.04	57.52
Bra038081.1-P	Field mustard	plastid	54.32	56.55
CDY22740	Canola	plastid	54.32	56.55
CDY22909	Canola	plastid	54.68	56.51
Bra039542.1-P	Field mustard	plastid	54.68	56.51
KRG96702	Soybean	cytosol	39.21	56.48
Solyc01g106090.2.1	Tomato	plastid	55.4	53.66
PGSC0003DMT400027723	Potato	cytosol	55.04	53.31
AT4G15510.1	Thale cress	plastid	53.24	51.57
Zm00001d030638_P001	Maize	plastid	65.11	50.84

Protein Annotations

MapMan:1.1.4.3.2	Gene3D:3.40.1000.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009543	GO:GO:0009570
GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043
GO:GO:0019898	GO:GO:0031977	GO:GO:0048564	InterPro:IPR016123	InterPro:Mog1/PsbP_a/b/a-sand	PFAM:PF01789
PANTHER:PTHR31407	PANTHER:PTHR31407:SF15	InterPro:PsbP	SUPFAM:SSF55724	EnsemblPlantsGene:TraesCS5A01G087200	EnsemblPlants:TraesCS5A01G087200.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:116571020..116573744

Molecular Weight (calculated)

30704.6 Da

IEP (calculated)

8.343

GRAVY (calculated)

-0.276

Length

278 amino acids

Sequence
(BLAST)

001: MSSRTCCSGL PATPRRQAGH HTLPLPAACG LSFAPEFGSS SRRGRPPPFC CTSTARTRVV ASCSVPRRNV LSTLLSASTV LLLGPREITL AETTGGAFRE
101: YIDTFDGYSF IYPKGWIQVK GAGADIFFRD PVLLDVNMSV DISSPSSSTY KTVEDLGPPE KAAEGVLKQY LTEFMSTRLG VRRESNVLSA SSKVADDGKL
201: YYEVEVNIKS YASNNELAVM PKDRVQSLEW DRRYLTVLGV ENNQLYALRL QTPERLLSEE DGDLRRVMDS FRVNKIQA

Best Arabidopsis Sequence Match ( AT4G15510.1 )
(BLAST)

001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI

Arabidopsis Description

PPD1PPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UV94]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.