Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20363867
plastid: 22908117 plastid: 26371478 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 98.08 | 98.55 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 82.21 | 83.82 |
| KRG91274 | Soybean | nucleus, plastid | 81.73 | 83.74 |
| KRH35533 | Soybean | plastid | 80.77 | 80.0 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 78.37 | 79.9 |
| Os08t0560900-01 | Rice | extracellular, plastid | 74.04 | 75.86 |
| EER93246 | Sorghum | plastid | 72.6 | 75.12 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 74.52 | 74.88 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 74.04 | 74.4 |
| Zm00001d034543_P001 | Maize | plastid | 71.15 | 74.37 |
| AT1G03130.1 | Thale cress | plastid | 72.6 | 74.02 |
| TraesCS5D01G468400.1 | Wheat | plastid | 70.67 | 72.06 |
| TraesCS5A01G457500.1 | Wheat | plastid | 70.67 | 71.71 |
| TraesCS5B01G466700.1 | Wheat | plastid | 70.67 | 71.71 |
| AT4G02770.1 | Thale cress | plastid | 71.63 | 71.63 |
| Zm00001d013039_P001 | Maize | plastid | 71.63 | 63.14 |
| CDY22079 | Canola | plastid | 45.19 | 62.67 |
| Bra036240.1-P | Field mustard | plastid | 72.12 | 53.76 |
| CDY21916 | Canola | plastid | 71.63 | 53.02 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 62.98 | 47.81 |
Protein Annotations
| MapMan:1.1.4.2.4 | Gene3D:3.30.1470.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009538 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | EMBL:M21344 |
| UniProt:P12372 | PFAM:PF02531 | PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 | InterPro:PsaD | InterPro:PsaD_sf |
| SUPFAM:SSF64234 | EnsemblPlantsGene:Solyc06g054260.1 | EnsemblPlants:Solyc06g054260.1.1 | UniParc:UPI00001324EE | SEG:seg | : |
Description
psaDPhotosystem I reaction center subunit II, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P12372]
Coordinates
chr6:-:37075431..37076057
Molecular Weight (calculated)
22919.6 Da
IEP (calculated)
10.264
GRAVY (calculated)
-0.453
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMATQASLF TPPLSVPKST TAPWKQSLVS FSTPKQLKST VSVTRPIRAM AEEAPAATEE KPAPAGFTPP QLDPNTPSPI FGGSTGGLLR KAQVEEFYVI
101: TWESPKEQIF EMPTGGAAIM RQGPNLLKLA RKEQCLALGT RLRSKYKINY QFYRVFPNGE VQYLHPKDGV YPEKVNPGRE GVGQNFRSIG KNKSAIEVKF
201: TGKQVYDI
101: TWESPKEQIF EMPTGGAAIM RQGPNLLKLA RKEQCLALGT RLRSKYKINY QFYRVFPNGE VQYLHPKDGV YPEKVNPGRE GVGQNFRSIG KNKSAIEVKF
201: TGKQVYDI
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
Arabidopsis Description
PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.