Factsheet for Solyc06g051310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073920.2.1
Solyc01g097790.2.1
Solyc01g100040.2.1
Solyc01g112060.2.1
Solyc02g069860.2.1
Solyc03g095610.2.1
Solyc03g096000.2.1
Solyc04g074800.2.1
Solyc05g052510.2.1
Solyc06g051310.2.1
Solyc06g054260.1.1
Solyc06g068220.2.1
Solyc06g075170.1.1
Solyc07g052050.1.1
Solyc07g052190.1.1
Solyc07g054180.2.1
Solyc07g062080.2.1
Solyc08g006660.1.1
Solyc09g005030.1.1
Solyc09g014450.2.1
Solyc09g058990.2.1
Solyc09g065280.2.1
Solyc10g007500.2.1
Solyc10g076460.1.1
Solyc10g080400.1.1
Solyc11g008430.1.1
Solyc11g068640.1.1
Solyc11g069450.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08530.1	Solyc07g052050.1.1	AT1G03140.1	21798944
AT3G08530.1	Solyc07g052190.1.1	AT1G03140.1	21798944
AT3G08530.1	Solyc09g065280.2.1	AT1G03140.1	21798944
AT3G08530.1	Solyc06g068220.2.1	AT1G52510.1	21798944
AT3G08530.1	Solyc07g062080.2.1	AT1G53510.1	21798944
AT3G08530.1	Solyc10g007500.2.1	AT1G53510.1	21798944
AT3G08530.1	Solyc01g073920.2.1	AT2G32840.1	21798944
AT3G08530.1	Solyc02g069860.2.1	AT2G34720.1	21798944
AT3G08530.1	Solyc09g005030.1.1	AT2G38300.1	21798944
AT3G08530.1	Solyc10g076460.1.1	AT2G38300.1	21798944
AT3G08530.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT3G08530.1	Solyc11g068640.1.1	AT3G01780.1	21187379
AT3G08530.1	Solyc01g097790.2.1	AT3G04860.1	21798944
AT3G08530.1	Solyc01g100040.2.1	AT3G05640.1	21798944
AT3G08530.1	Solyc09g058990.2.1	AT3G07440.1	21798944
AT3G08530.1	Solyc03g096000.2.1	AT3G08530.1	21187379
AT3G08530.1	Solyc05g052510.2.1	AT3G08530.1	21187379
AT3G08530.1	Solyc06g051310.2.1	AT3G08530.1	21187379
AT3G08530.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT3G08530.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT3G08530.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT3G08530.1	Solyc06g075170.1.1	AT3G45210.1	21798944
AT3G08530.1	Solyc11g069450.1.1	AT3G45210.1	21798944
AT3G08530.1	Solyc11g008430.1.1	AT3G54840.1	21798944
AT3G08530.1	Solyc06g054260.1.1	AT4G02770.1	21798944
AT3G08530.1	Solyc08g006660.1.1	AT4G24840.1	21798944
AT3G08530.1	Solyc01g112060.2.1	AT4G35250.1	21798944
AT3G08530.1	Solyc03g095610.2.1	AT5G05190.1	21798944
AT3G08530.1	Solyc04g074800.2.1	AT5G30490.1	21798944
AT3G11130.1	Solyc07g054180.2.1	AT2G20760.1	24529374
AT3G11130.1	Solyc03g096000.2.1	AT3G08530.1	24529374
AT3G11130.1	Solyc05g052510.2.1	AT3G08530.1	24529374
AT3G11130.1	Solyc06g051310.2.1	AT3G08530.1	24529374
AT3G11130.1	Solyc09g014450.2.1	AT3G51890.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052510.2.1	Tomato	nucleus, plastid	97.06	96.78
Solyc03g096000.2.1	Tomato	nucleus	96.06	96.0
KRG97711	Soybean	endoplasmic reticulum, nucleus	93.94	94.0
KRH31163	Soybean	endoplasmic reticulum	93.65	93.71
KRH14933	Soybean	nucleus	93.0	93.06
KRH73205	Soybean	nucleus	93.18	92.85
AT3G08530.1	Thale cress	cytosol, plasma membrane, plastid	92.24	92.13
AT3G11130.1	Thale cress	cytosol, plasma membrane	92.3	92.08
Bra034166.1-P	Field mustard	cytosol	77.95	91.57
Bra034864.1-P	Field mustard	cytosol	80.07	91.53
EES07849	Sorghum	plastid	91.77	91.34
KXG22761	Sorghum	plastid	91.77	91.29
TraesCS5A01G153500.1	Wheat	golgi, unclear	90.77	90.4
TraesCS5D01G158800.1	Wheat	plastid	90.71	90.34
TraesCS5B01G152300.1	Wheat	unclear	90.71	90.34
TraesCS4A01G182300.1	Wheat	extracellular, golgi	90.83	90.09
CDY22158	Canola	cytosol	10.05	90.0
TraesCS4D01G130900.1	Wheat	golgi, unclear	90.71	89.97
Bra001286.1-P	Field mustard	cytosol	78.37	89.82
TraesCS4B01G136100.2	Wheat	golgi, unclear	90.71	89.09
Bra001391.1-P	Field mustard	cytosol	76.01	89.05
Os11t0104900-00	Rice	plasma membrane	36.33	88.41
Os12t0104766-00	Rice	plasma membrane	29.92	88.06
Os11t0104866-00	Rice	plasma membrane	29.81	87.72
HORVU4Hr1G024710.4	Barley	plastid	90.65	86.58
HORVU5Hr1G048010.1	Barley	plastid	90.53	85.41
Bra029698.1-P	Field mustard	cytosol	73.55	84.58
CDY22157	Canola	cytosol	3.53	76.92
Zm00001d021067_P001	Maize	cytosol, mitochondrion	18.81	72.23
Os12t0104800-01	Rice	cytosol	5.06	70.49
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	1.94	62.26
VIT_16s0115g00130.t01	Wine grape	cytosol	4.12	60.34
VIT_19s0027g01340.t01	Wine grape	cytosol	8.64	47.88

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	Gene3D:2.130.10.110	MapMan:22.1.1.1	InterPro:ARM-type_fold	InterPro:Clathrin_H-chain/VPS_repeat
InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	InterPro:Clathrin_heavy_chain	ncoils:Coil	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032051	GO:GO:0048268	GO:GO:0071439
InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025	UniProt:K4C5S4	PFAM:PF00637	PFAM:PF01394
PFAM:PF09268	PFAM:PF13838	PIRSF:PIRSF002290	PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1
SMART:SM00299	SUPFAM:SSF48371	SUPFAM:SSF50989	EnsemblPlantsGene:Solyc06g051310.2	EnsemblPlants:Solyc06g051310.2.1	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002766EE2	SEG:seg	:	:	:	:

Description

Clathrin heavy chain [Source:UniProtKB/TrEMBL;Acc:K4C5S4]

Coordinates

chr6:+:34542438..34553727

Molecular Weight (calculated)

192664.0 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.157

Length

1701 amino acids

Sequence
(BLAST)

0001: MAAANAPITM KETLTLQSIG VNPQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTS QDHLQIFNIE
0101: AKQKIKSYQM PEQVVFWKWI TPKMLGLVTQ TAVYHWPIEG DSEPVKMFDR TANLANNQII NYRCDPSEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAA FASFRVPGNE RDSILISFAT KSSNAGQVTS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQIS HKYSLIYVIT KLGLLFVYDL
0301: ETATAVYRNR ISPDPIFLTA EASSIGGFYA INRRGQVLLA TVNEATLVPF VSGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTKGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRSDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NMIREATAFL LDVLKPNLPE HGFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYSELPDI KRVIVNTHAI EPQALVEFFG TLSREWALEC MKDLLVINIK GNLQIIVQVA
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSSSEDPD IHFKYIESAA RTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQARY VVERMDGDIW EKVLNPENEF RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNIRDINRAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDATH FLDVIHAAED ADVYHDLVKY LLMVRQKTKE PKVDSELIYA YAKIDRLGDI
1201: EEFILMPNVA NLPNVGDKLF DEGLYEAAKI IFAFISNWAK LASTLVKLNQ FQGAVDAARK ANSAKTWKDV CFACVDAEEF RLAQICGLNI IVQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRHEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TVMNHSPDAW
1401: DHMQFKDIVV KVANVELYYK AVHFYLQEHP DLINDLLNVL ALRVDHTRVV DIMRKAGHLR LVKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIEL
1501: HDNFDQIGLA QKIEKHELLE MRRVAASIYK KAGRWKQSIA LSKKDNLYKD AMETASQSGD RELAEELLVY FIEQGKKECF ASCLFVCYDL IRPDVALELA
1601: WMNNMIDFAF PYLLQFIREY TGKVDELIKD KIEAQSEAKA RENEEKDVMK QQNMYAQLLP LALPAPPMPG MGGGFAAPPP PMGGMGMPPM PPFGMPPMGP
1701: Y

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.