Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054416 | Potato | nucleus | 96.15 | 95.24 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 69.23 | 69.23 |
| KRH11777 | Soybean | nucleus | 62.5 | 63.41 |
| KRH42997 | Soybean | nucleus | 61.54 | 62.14 |
| AT1G30500.2 | Thale cress | nucleus | 53.37 | 58.42 |
| KRH59113 | Soybean | nucleus | 60.58 | 58.06 |
| KRH36784 | Soybean | nucleus | 61.06 | 57.99 |
| Bra032395.1-P | Field mustard | nucleus | 48.08 | 54.64 |
| CDY02298 | Canola | nucleus | 47.6 | 54.1 |
| CDY09571 | Canola | nucleus | 47.6 | 54.1 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 39.42 | 51.57 |
| AT2G34720.1 | Thale cress | nucleus | 48.56 | 51.01 |
| CDX84285 | Canola | nucleus | 44.71 | 47.45 |
| CDY31636 | Canola | nucleus | 44.71 | 47.21 |
| Bra005397.1-P | Field mustard | nucleus | 44.71 | 47.21 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 50.0 | 44.44 |
| Os08t0196700-01 | Rice | nucleus | 40.87 | 44.04 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 44.23 | 43.81 |
| EES17387 | Sorghum | nucleus | 44.71 | 43.66 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 44.23 | 43.6 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 44.23 | 42.99 |
| Os12t0613000-01 | Rice | nucleus | 44.23 | 42.4 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 41.83 | 42.03 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 45.67 | 41.67 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 43.75 | 38.89 |
| Solyc10g081840.1.1 | Tomato | nucleus | 23.08 | 31.17 |
| Zm00001d041491_P001 | Maize | nucleus | 42.79 | 30.8 |
| Solyc03g121940.2.1 | Tomato | nucleus | 32.69 | 28.22 |
| Solyc12g009050.1.1 | Tomato | nucleus | 34.13 | 28.06 |
| Solyc10g079150.1.1 | Tomato | nucleus | 27.4 | 26.03 |
| Solyc01g087240.2.1 | Tomato | nucleus | 36.54 | 25.08 |
| Solyc01g008490.2.1 | Tomato | nucleus | 36.54 | 24.36 |
| Solyc11g065700.1.1 | Tomato | nucleus | 33.65 | 23.33 |
| Solyc01g006930.2.1 | Tomato | nucleus | 30.29 | 20.26 |
| Solyc08g062210.2.1 | Tomato | nucleus | 31.25 | 20.0 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| InterPro:IPR001289 | UniProt:K4B7W8 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 |
| PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF18 | SMART:SM00521 | EnsemblPlantsGene:Solyc02g069860.2 | EnsemblPlants:Solyc02g069860.2.1 |
| UniParc:UPI0002768477 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:39676145..39682167
Molecular Weight (calculated)
23063.9 Da
IEP (calculated)
7.838
GRAVY (calculated)
-0.949
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSLHYHSD GSENEQSENQ SEAHSESSSP AAGMSVPGTV TTNMHYVMPN QLGNGNPMAQ TAYPYPDPYY RSIFAPYDPQ PYPPQPYPAQ PMVHIQLMGI
101: QQAGVPLPSD AIDEPVFVNA KQYHGILRRR QSRAKAESEK KLLKARKPYL HESRHLHALK RARGCGGRFL TAKETDNQQK QDETGDKSQV NINLESGKDK
201: VASSENAS
101: QQAGVPLPSD AIDEPVFVNA KQYHGILRRR QSRAKAESEK KLLKARKPYL HESRHLHALK RARGCGGRFL TAKETDNQQK QDETGDKSQV NINLESGKDK
201: VASSENAS
001: MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SARNYESIVT SLVYSDPGTT NSMAPGQYPY PDPYYRSIFA PPPQPYTGVH LQLMGVQQQG VPLPSDAVEE
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
Arabidopsis Description
NFYA7Nuclear transcription factor Y subunit A-7 [Source:UniProtKB/Swiss-Prot;Acc:Q84JP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.