Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000740 | Potato | nucleus | 92.49 | 77.74 |
| KRH37469 | Soybean | nucleus | 41.9 | 46.49 |
| KRH12475 | Soybean | nucleus | 41.11 | 45.61 |
| KRH02649 | Soybean | nucleus | 37.94 | 45.07 |
| KRH19255 | Soybean | nucleus | 36.76 | 39.91 |
| Solyc02g069860.2.1 | Tomato | nucleus | 28.06 | 34.13 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 51.38 | 32.26 |
| Solyc03g121940.2.1 | Tomato | nucleus | 28.85 | 30.29 |
| Solyc10g081840.1.1 | Tomato | nucleus | 18.18 | 29.87 |
| Solyc10g079150.1.1 | Tomato | nucleus | 25.69 | 29.68 |
| Solyc08g062210.2.1 | Tomato | nucleus | 34.39 | 26.77 |
| Solyc11g065700.1.1 | Tomato | nucleus | 30.04 | 25.33 |
| Solyc01g087240.2.1 | Tomato | nucleus | 28.06 | 23.43 |
| Solyc01g008490.2.1 | Tomato | nucleus | 28.85 | 23.4 |
| Solyc01g006930.2.1 | Tomato | nucleus | 25.3 | 20.58 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| InterPro:IPR001289 | UniProt:K4DBZ3 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 |
| PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | SMART:SM00521 | EnsemblPlantsGene:Solyc12g009050.1 | EnsemblPlants:Solyc12g009050.1.1 |
| UniParc:UPI00027696E5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:2340487..2342273
Molecular Weight (calculated)
28145.0 Da
IEP (calculated)
8.858
GRAVY (calculated)
-0.729
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSLDPDLQG ETLRLTHTTL NSQDEMTASG KTNSQDQCAS SEYAHDERYG RDMQVQIKPA LFSLQNEVAN STGLSAFGYS DPYISGLYTA YGPQPYPQMM
101: GIAPTRVPLP VDMAEDGPIY VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ SDPNSYPTNS TSSLDSVEHE
201: GSTSAFSSVR QDVVHNGINF QQQQPDHMAF SVSSHMVITM QGNGTQQHAP VVR
101: GIAPTRVPLP VDMAEDGPIY VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ SDPNSYPTNS TSSLDSVEHE
201: GSTSAFSSVR QDVVHNGINF QQQQPDHMAF SVSSHMVITM QGNGTQQHAP VVR
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.