Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006358 | Potato | nucleus | 84.65 | 72.08 |
| Solyc02g069860.2.1 | Tomato | nucleus | 28.22 | 32.69 |
| CDY69800 | Canola | nucleus | 29.05 | 30.3 |
| Bra014368.1-P | Field mustard | nucleus | 29.05 | 30.3 |
| Solyc10g081840.1.1 | Tomato | nucleus | 19.09 | 29.87 |
| CDY26138 | Canola | nucleus | 29.05 | 29.79 |
| Solyc12g009050.1.1 | Tomato | nucleus | 30.29 | 28.85 |
| CDY56623 | Canola | nucleus | 27.8 | 28.63 |
| Solyc10g079150.1.1 | Tomato | nucleus | 25.73 | 28.31 |
| CDY02477 | Canola | nucleus | 26.56 | 28.07 |
| Bra030996.1-P | Field mustard | mitochondrion | 24.48 | 27.96 |
| Bra037968.1-P | Field mustard | nucleus | 29.46 | 27.84 |
| Bra008052.1-P | Field mustard | nucleus | 32.37 | 26.8 |
| CDY48025 | Canola | nucleus | 32.37 | 26.8 |
| Bra030899.1-P | Field mustard | nucleus | 27.8 | 26.69 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 26.56 | 26.67 |
| Solyc08g062210.2.1 | Tomato | nucleus | 34.02 | 25.23 |
| CDY51397 | Canola | nucleus | 29.46 | 24.91 |
| CDX82133 | Canola | nucleus | 32.78 | 24.76 |
| KRH10071 | Soybean | nucleus | 30.29 | 24.58 |
| KRH47551 | Soybean | nucleus | 35.27 | 24.43 |
| CDY33084 | Canola | nucleus | 29.88 | 24.08 |
| Bra021527.1-P | Field mustard | nucleus | 30.29 | 23.7 |
| CDY39091 | Canola | nucleus | 30.29 | 23.7 |
| AT3G14020.1 | Thale cress | nucleus | 30.29 | 23.7 |
| Bra016031.1-P | Field mustard | nucleus | 31.54 | 23.6 |
| CDX96435 | Canola | nucleus | 31.54 | 23.6 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 32.78 | 23.51 |
| KRH06120 | Soybean | nucleus | 31.12 | 23.51 |
| AT1G17590.3 | Thale cress | nucleus | 31.95 | 23.48 |
| AT1G72830.2 | Thale cress | nucleus | 32.78 | 23.17 |
| AT1G54160.1 | Thale cress | nucleus | 29.46 | 23.05 |
| Solyc11g065700.1.1 | Tomato | nucleus | 28.63 | 23.0 |
| CDY33253 | Canola | nucleus | 29.05 | 22.73 |
| Solyc01g008490.2.1 | Tomato | nucleus | 28.63 | 22.12 |
| CDX72950 | Canola | nucleus | 31.12 | 21.87 |
| Solyc01g087240.2.1 | Tomato | nucleus | 27.39 | 21.78 |
| CDY21741 | Canola | nucleus | 28.22 | 21.12 |
| CDY30854 | Canola | nucleus | 12.45 | 20.55 |
| CDY70458 | Canola | nucleus | 32.37 | 19.26 |
| Solyc01g006930.2.1 | Tomato | nucleus | 23.24 | 18.01 |
| CDX81837 | Canola | nucleus | 19.09 | 15.44 |
Protein Annotations
| EnsemblPlants:Solyc03g121940.2.1 | EnsemblPlantsGene:Solyc03g121940.2 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | InterPro:NFYA |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | PFAM:PF02045 | PFscan:PS51152 | PRINTS:PR00616 | SEG:seg |
| SMART:SM00521 | UniParc:UPI00027657C1 | UniProt:K4BMZ2 | MapMan:15.5.51.1 | : | : |
Description
No Description!
Coordinates
chr3:-:69938394..69943048
Molecular Weight (calculated)
27185.9 Da
IEP (calculated)
9.392
GRAVY (calculated)
-0.736
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKTIFLCEQ IGSVRSSGKS DDSQSVSSQE HGWTFDTYQT NFAVVPFPHP DPYYHDLVAA YGNPTLVQSQ MLGTVAPRVP LPLDLKQDEP IFVNAKQYQA
101: ILRRRQYRAR LEAQNKLSKG RKPYLHESRH RHALNRARGP GGRFVNMKKP GESKSPDLIN GQDNQIPDEL QLNTKMLERD VDQSGSHSTP FYSAITSGSK
201: GDAIYHHQLF NYSAFSAHNV GVSQLDKEKK DNMSYPCLSS F
101: ILRRRQYRAR LEAQNKLSKG RKPYLHESRH RHALNRARGP GGRFVNMKKP GESKSPDLIN GQDNQIPDEL QLNTKMLERD VDQSGSHSTP FYSAITSGSK
201: GDAIYHHQLF NYSAFSAHNV GVSQLDKEKK DNMSYPCLSS F
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.