Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30854 | Canola | nucleus | 55.42 | 91.1 |
| Zm00001d029489_P002 | Maize | nucleus | 21.67 | 57.78 |
| CDX96435 | Canola | nucleus | 50.42 | 37.58 |
| CDY48025 | Canola | nucleus | 45.42 | 37.46 |
| CDX72950 | Canola | nucleus | 50.83 | 35.57 |
| CDX82133 | Canola | nucleus | 47.08 | 35.42 |
| AT1G72830.2 | Thale cress | nucleus | 46.67 | 32.84 |
| CDY37330 | Canola | nucleus | 23.33 | 31.11 |
| CDY69800 | Canola | nucleus | 29.17 | 30.3 |
| CDY02477 | Canola | nucleus | 28.75 | 30.26 |
| CDY56623 | Canola | nucleus | 29.17 | 29.91 |
| CDY26138 | Canola | nucleus | 29.17 | 29.79 |
| Os03t0174900-01 | Rice | vacuole | 25.83 | 29.67 |
| CDY70458 | Canola | nucleus | 49.17 | 29.14 |
| CDY05192 | Canola | nucleus | 21.67 | 29.05 |
| CDY02298 | Canola | nucleus | 21.67 | 28.42 |
| CDY09571 | Canola | nucleus | 21.67 | 28.42 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 27.92 | 27.69 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 27.92 | 27.46 |
| EER92762 | Sorghum | nucleus | 27.5 | 26.61 |
| Solyc03g121940.2.1 | Tomato | nucleus | 26.67 | 26.56 |
| CDY21741 | Canola | nucleus | 35.0 | 26.09 |
| CDX84285 | Canola | nucleus | 21.25 | 26.02 |
| CDY31636 | Canola | nucleus | 21.25 | 25.89 |
| Os02t0776400-01 | Rice | nucleus | 28.75 | 25.56 |
| CDY51397 | Canola | nucleus | 30.0 | 25.26 |
| CDY33253 | Canola | nucleus | 31.67 | 24.68 |
| CDY39091 | Canola | nucleus | 31.67 | 24.68 |
| CDX78492 | Canola | nucleus | 20.83 | 24.39 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 25.83 | 24.31 |
| CDY33084 | Canola | nucleus | 30.0 | 24.08 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 25.42 | 24.02 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 25.42 | 24.02 |
| Os07t0608200-01 | Rice | nucleus | 30.0 | 23.68 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 29.58 | 23.43 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 28.33 | 23.37 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 29.17 | 23.33 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 27.92 | 23.26 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 27.92 | 23.1 |
| PGSC0003DMT400006358 | Potato | nucleus | 27.08 | 22.97 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 28.33 | 22.67 |
| KRH06120 | Soybean | nucleus | 30.0 | 22.57 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 27.5 | 22.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.17 | 22.44 |
| KRH47551 | Soybean | nucleus | 32.5 | 22.41 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 29.58 | 22.4 |
| EER99688 | Sorghum | nucleus | 27.5 | 21.93 |
| OQU85816 | Sorghum | nucleus | 27.5 | 21.71 |
| Zm00001d006835_P002 | Maize | nucleus | 27.08 | 21.67 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 25.0 | 21.35 |
| Zm00001d022109_P003 | Maize | nucleus | 26.67 | 21.26 |
| CDX82223 | Canola | nucleus | 24.58 | 21.07 |
| EER94699 | Sorghum | nucleus | 27.08 | 21.04 |
| CDX91161 | Canola | nucleus | 19.17 | 21.0 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 28.75 | 20.6 |
| CDY18809 | Canola | nucleus | 23.33 | 20.44 |
| CDX85686 | Canola | nucleus | 20.0 | 20.34 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 28.33 | 20.24 |
| CDX70098 | Canola | nucleus | 22.5 | 20.22 |
| KRH10071 | Soybean | nucleus | 25.0 | 20.2 |
| CDY06393 | Canola | nucleus | 25.0 | 20.13 |
| Os03t0411100-01 | Rice | nucleus | 26.25 | 19.87 |
| CDX98930 | Canola | nucleus | 22.08 | 19.85 |
| CDX81837 | Canola | nucleus | 24.58 | 19.8 |
| CDY32398 | Canola | nucleus | 24.17 | 19.46 |
| CDX74133 | Canola | nucleus | 22.5 | 19.22 |
| CDY14662 | Canola | nucleus | 22.5 | 19.22 |
| CDY19591 | Canola | nucleus | 23.33 | 19.05 |
| Zm00001d027874_P004 | Maize | nucleus | 20.83 | 19.01 |
| CDX70480 | Canola | nucleus | 19.58 | 18.15 |
| CDX97206 | Canola | nucleus | 21.25 | 17.89 |
| CDY53967 | Canola | nucleus | 20.83 | 17.61 |
| Zm00001d026305_P002 | Maize | nucleus | 19.17 | 10.18 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078C7V4 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX72947 | ProteinID:CDX72947 | ProteinID:CDX72947.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00103373001 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF8 | SMART:SM00521 | TMHMM:TMhelix | UniParc:UPI0004EF4DC2 | SEG:seg | : |
Description
BnaC06g33950D
Coordinates
chrLK031797:-:1269200..1269996
Molecular Weight (calculated)
27266.9 Da
IEP (calculated)
10.188
GRAVY (calculated)
0.023
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFQVSSSIL QTCNPQMVGM VPGRVALPVE ITETESVFVN AKQYHAIMRR RQQRAKLEAQ NKLIKARKPY LHESRHVHAL KRPRGSGGRF LNTKKLLQES
101: QQAAAKEQER DKSVQQAMRQ TCLDSKLICC STTKTVVAQP LLALTSHLFP KVLISSEKLN SSFRVSQQLR LTELCLFMVS PMTCMEVGTC TISLSISETL
201: DLWCCFMFPT KRGSHPWLLL LLVLLLAVTC YFSISLYLLF
101: QQAAAKEQER DKSVQQAMRQ TCLDSKLICC STTKTVVAQP LLALTSHLFP KVLISSEKLN SSFRVSQQLR LTELCLFMVS PMTCMEVGTC TISLSISETL
201: DLWCCFMFPT KRGSHPWLLL LLVLLLAVTC YFSISLYLLF
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.