Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96435 | Canola | nucleus | 87.46 | 93.17 |
| CDX82133 | Canola | nucleus | 77.26 | 83.07 |
| CDY48025 | Canola | nucleus | 68.22 | 80.41 |
| AT1G72830.2 | Thale cress | nucleus | 76.09 | 76.54 |
| CDY70458 | Canola | nucleus | 77.55 | 65.68 |
| Zm00001d029489_P002 | Maize | nucleus | 15.45 | 58.89 |
| CDY21741 | Canola | nucleus | 55.1 | 58.7 |
| CDX81837 | Canola | nucleus | 46.36 | 53.36 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 35.57 | 50.83 |
| CDY30854 | Canola | nucleus | 18.66 | 43.84 |
| CDY69800 | Canola | nucleus | 29.15 | 43.29 |
| CDY26138 | Canola | nucleus | 28.86 | 42.13 |
| CDY56623 | Canola | nucleus | 27.7 | 40.6 |
| CDY02477 | Canola | nucleus | 26.82 | 40.35 |
| KRH47551 | Soybean | nucleus | 39.07 | 38.51 |
| EER92762 | Sorghum | nucleus | 27.41 | 37.9 |
| Os03t0174900-01 | Rice | vacuole | 23.03 | 37.8 |
| CDY51397 | Canola | nucleus | 30.9 | 37.19 |
| Os07t0608200-01 | Rice | nucleus | 32.94 | 37.17 |
| KRH06120 | Soybean | nucleus | 34.4 | 36.99 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 26.24 | 36.89 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 25.95 | 36.78 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 30.61 | 36.46 |
| CDY39091 | Canola | nucleus | 32.65 | 36.36 |
| KRH10071 | Soybean | nucleus | 31.49 | 36.36 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 30.61 | 36.08 |
| CDY09571 | Canola | nucleus | 19.24 | 36.07 |
| CDY33253 | Canola | nucleus | 32.36 | 36.04 |
| CDY33084 | Canola | nucleus | 31.2 | 35.79 |
| CDY02298 | Canola | nucleus | 18.95 | 35.52 |
| EER99688 | Sorghum | nucleus | 30.61 | 34.88 |
| CDX78492 | Canola | nucleus | 20.12 | 33.66 |
| CDY05192 | Canola | nucleus | 17.49 | 33.52 |
| Zm00001d006835_P002 | Maize | nucleus | 28.86 | 33.0 |
| PGSC0003DMT400006358 | Potato | nucleus | 27.11 | 32.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.74 | 32.69 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 28.57 | 32.67 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 30.03 | 32.49 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 28.57 | 32.34 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 28.28 | 32.33 |
| Zm00001d022109_P003 | Maize | nucleus | 28.28 | 32.23 |
| CDY31636 | Canola | nucleus | 18.37 | 31.98 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 31.2 | 31.85 |
| EER94699 | Sorghum | nucleus | 28.57 | 31.72 |
| CDX84285 | Canola | nucleus | 18.08 | 31.63 |
| Solyc03g121940.2.1 | Tomato | nucleus | 21.87 | 31.12 |
| CDY37330 | Canola | nucleus | 16.33 | 31.11 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 26.24 | 31.03 |
| Os03t0411100-01 | Rice | nucleus | 28.57 | 30.91 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 22.74 | 30.59 |
| Zm00001d027874_P004 | Maize | nucleus | 23.32 | 30.42 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 22.45 | 30.32 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 22.16 | 29.92 |
| CDX85686 | Canola | nucleus | 20.12 | 29.24 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 28.28 | 28.96 |
| Os02t0776400-01 | Rice | nucleus | 22.74 | 28.89 |
| CDX91161 | Canola | nucleus | 18.37 | 28.77 |
| CDX82223 | Canola | nucleus | 22.16 | 27.14 |
| CDX70480 | Canola | nucleus | 20.41 | 27.03 |
| CDY53967 | Canola | nucleus | 22.16 | 26.76 |
| CDX97206 | Canola | nucleus | 22.16 | 26.67 |
| CDY32398 | Canola | nucleus | 23.03 | 26.51 |
| CDY06393 | Canola | nucleus | 22.74 | 26.17 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 20.99 | 25.62 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 21.87 | 25.6 |
| OQU85816 | Sorghum | nucleus | 22.45 | 25.33 |
| CDX74133 | Canola | nucleus | 20.7 | 25.27 |
| CDY14662 | Canola | nucleus | 20.7 | 25.27 |
| CDY18809 | Canola | nucleus | 20.12 | 25.18 |
| CDX70098 | Canola | nucleus | 19.24 | 24.72 |
| CDX98930 | Canola | nucleus | 19.24 | 24.72 |
| CDY19591 | Canola | nucleus | 20.7 | 24.15 |
| Zm00001d026305_P002 | Maize | nucleus | 22.74 | 17.26 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078C824 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX72950 | ProteinID:CDX72950 | ProteinID:CDX72950.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00103376001 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF8 | SMART:SM00521 | UniParc:UPI0004EEA047 | SEG:seg | : | : |
Description
BnaC06g33980D
Coordinates
chrLK031797:-:1275772..1277767
Molecular Weight (calculated)
38152.2 Da
IEP (calculated)
9.792
GRAVY (calculated)
-0.663
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQKKVRVLL MDMVVSQERH QMSKKGSTLP YLNTSISWGG MISTEPLSLK VVDARPEHMH ATKQISFQDQ DSPSTQSTCQ SYTEVASSGD DKSCRQISFS
101: TKSGSEETQR KVSATHTKPC AMTSFPNMHF APPQTNFSFH YADPHYGGLL ATPYLPHAPT CNPQMVGMVP GRVALPVEIT EAEPVFVNAK QYHAIMRRRQ
201: QRAKLEAQNK LIKARKPYLH ESRHVHALKR PRGSGGRFLN TKKLLQESEQ AAAKEQEHDK SVQQANLSRF KAHVLQHNKD RGGSTTSGSD VTCVSDGADI
301: FGHTEFQFSG FPIPTQTNRA ILVHGQSNDM HGGGDLHHFS VHI
101: TKSGSEETQR KVSATHTKPC AMTSFPNMHF APPQTNFSFH YADPHYGGLL ATPYLPHAPT CNPQMVGMVP GRVALPVEIT EAEPVFVNAK QYHAIMRRRQ
201: QRAKLEAQNK LIKARKPYLH ESRHVHALKR PRGSGGRFLN TKKLLQESEQ AAAKEQEHDK SVQQANLSRF KAHVLQHNKD RGGSTTSGSD VTCVSDGADI
301: FGHTEFQFSG FPIPTQTNRA ILVHGQSNDM HGGGDLHHFS VHI
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.