Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G315300.1 | Wheat | nucleus | 77.22 | 85.43 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 77.22 | 85.1 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 76.87 | 85.04 |
| Os02t0776400-01 | Rice | nucleus | 56.58 | 58.89 |
| OQU85816 | Sorghum | nucleus | 57.3 | 52.96 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 54.09 | 51.88 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 23.49 | 41.51 |
| KRH37469 | Soybean | nucleus | 30.61 | 37.72 |
| KRH02649 | Soybean | nucleus | 28.11 | 37.09 |
| KRH12475 | Soybean | nucleus | 29.89 | 36.84 |
| KRH19255 | Soybean | nucleus | 28.47 | 34.33 |
| PGSC0003DMT400055982 | Potato | nucleus | 26.33 | 34.26 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 33.81 | 32.76 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 24.56 | 32.24 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 33.81 | 31.67 |
| Bra030996.1-P | Field mustard | mitochondrion | 23.49 | 31.28 |
| CDY69800 | Canola | nucleus | 25.62 | 31.17 |
| Bra014368.1-P | Field mustard | nucleus | 25.27 | 30.74 |
| CDY26138 | Canola | nucleus | 25.62 | 30.64 |
| CDY56623 | Canola | nucleus | 25.27 | 30.34 |
| Bra037968.1-P | Field mustard | nucleus | 26.69 | 29.41 |
| CDY02477 | Canola | nucleus | 23.84 | 29.39 |
| Bra030899.1-P | Field mustard | nucleus | 25.27 | 28.29 |
| Solyc08g062210.2.1 | Tomato | nucleus | 31.67 | 27.38 |
| CDY51397 | Canola | nucleus | 26.69 | 26.32 |
| KRH47551 | Soybean | nucleus | 31.67 | 25.57 |
| AT1G54160.1 | Thale cress | nucleus | 27.76 | 25.32 |
| CDY33084 | Canola | nucleus | 26.69 | 25.08 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 21.35 | 25.0 |
| KRH10071 | Soybean | nucleus | 25.98 | 24.58 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 29.18 | 24.4 |
| CDY48025 | Canola | nucleus | 25.27 | 24.4 |
| Bra008052.1-P | Field mustard | nucleus | 25.27 | 24.4 |
| KRH06120 | Soybean | nucleus | 27.05 | 23.82 |
| AT3G14020.1 | Thale cress | nucleus | 25.98 | 23.7 |
| CDY39091 | Canola | nucleus | 25.62 | 23.38 |
| Bra021527.1-P | Field mustard | nucleus | 25.62 | 23.38 |
| AT1G17590.3 | Thale cress | nucleus | 27.05 | 23.17 |
| CDY33253 | Canola | nucleus | 25.27 | 23.05 |
| CDY21741 | Canola | nucleus | 26.33 | 22.98 |
| CDX96435 | Canola | nucleus | 25.98 | 22.67 |
| Bra016031.1-P | Field mustard | nucleus | 25.98 | 22.67 |
| CDX82133 | Canola | nucleus | 25.27 | 22.26 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 31.32 | 21.84 |
| HORVU5Hr1G007890.1 | Barley | nucleus | 26.33 | 21.7 |
| AT1G72830.2 | Thale cress | nucleus | 25.62 | 21.11 |
| CDX72950 | Canola | nucleus | 25.62 | 20.99 |
| CDY30854 | Canola | nucleus | 10.32 | 19.86 |
| CDY70458 | Canola | nucleus | 27.05 | 18.77 |
| HORVU5Hr1G092700.5 | Barley | nucleus | 23.49 | 16.92 |
| CDX81837 | Canola | nucleus | 16.37 | 15.44 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G081080.12 | EnsemblPlantsGene:HORVU6Hr1G081080 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | InterPro:NFYA |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF10 | PFAM:PF02045 | PFscan:PS51152 | PRINTS:PR00616 | SEG:seg |
| SMART:SM00521 | UniParc:UPI000B475383 | UniProt:A0A287UWB0 | MapMan:15.5.51.1 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:544207949..544211747
Molecular Weight (calculated)
30420.5 Da
IEP (calculated)
10.024
GRAVY (calculated)
-0.641
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: AEEASLASRG GGTERLGEDG REEARGSHAS PLFVFLLRSQ RCDSFGKSVD DSMRSTLTFG EKHSVFTSQN TDYGQPMACI SYPFSDSGSG VWAAYGSQAM
101: FHPLTAGGGS SATARVPLPL ELAADEPIFV NPKQYNGILR RRQLRAKLEA QNKLTKNRKP YLHESRHLHA MKRARGSGGR FLNSKQLQQQ QQSGSACTKA
201: IADGANSLGS TYLRLGSGAA GDRPTSASKT ISSQENNKRV AALAPAFTMI PAAQKDDDFF HHHGHHLSFS GHFGQSSERY T
101: FHPLTAGGGS SATARVPLPL ELAADEPIFV NPKQYNGILR RRQLRAKLEA QNKLTKNRKP YLHESRHLHA MKRARGSGGR FLNSKQLQQQ QQSGSACTKA
201: IADGANSLGS TYLRLGSGAA GDRPTSASKT ISSQENNKRV AALAPAFTMI PAAQKDDDFF HHHGHHLSFS GHFGQSSERY T
001: MQVFQRKEDS SWGNSMPTTN SNIQGSESFS LTKDMIMSTT QLPAMKHSGL QLQNQDSTSS QSTEEESGGG EVASFGEYKR YGCSIVNNNL SGYIENLGKP
101: IENYTKSITT SSMVSQDSVF PAPTSGQISW SLQCAETSHF NGFLAPEYAS TPTALPHLEM MGLVSSRVPL PHHIQENEPI FVNAKQYHAI LRRRKHRAKL
201: EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ MANGQNFSMS PHGGGSGIGS SSISPSSNSN CINMFQNPQF RFSGYPSTHH
301: ASALMSGT
101: IENYTKSITT SSMVSQDSVF PAPTSGQISW SLQCAETSHF NGFLAPEYAS TPTALPHLEM MGLVSSRVPL PHHIQENEPI FVNAKQYHAI LRRRKHRAKL
201: EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ MANGQNFSMS PHGGGSGIGS SSISPSSNSN CINMFQNPQF RFSGYPSTHH
301: ASALMSGT
Arabidopsis Description
NFYA5Nuclear transcription factor Y subunit A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.