Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021527.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY33253 | Canola | nucleus | 95.45 | 95.45 |
| AT3G14020.1 | Thale cress | nucleus | 71.1 | 71.1 |
| Zm00001d029489_P002 | Maize | nucleus | 17.53 | 60.0 |
| CDY56623 | Canola | nucleus | 42.21 | 55.56 |
| CDY02477 | Canola | nucleus | 39.94 | 53.95 |
| CDY69800 | Canola | nucleus | 39.94 | 53.25 |
| CDY26138 | Canola | nucleus | 40.26 | 52.77 |
| CDY51397 | Canola | nucleus | 46.1 | 49.82 |
| CDY33084 | Canola | nucleus | 45.45 | 46.82 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 28.25 | 35.95 |
| CDY48025 | Canola | nucleus | 33.77 | 35.74 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 28.25 | 35.66 |
| Os03t0174900-01 | Rice | vacuole | 24.03 | 35.41 |
| CDX82133 | Canola | nucleus | 36.36 | 35.11 |
| EER92762 | Sorghum | nucleus | 28.25 | 35.08 |
| KRH06120 | Soybean | nucleus | 36.04 | 34.8 |
| KRH47551 | Soybean | nucleus | 39.29 | 34.77 |
| CDX96435 | Canola | nucleus | 36.04 | 34.47 |
| CDY02298 | Canola | nucleus | 19.48 | 32.79 |
| CDX72950 | Canola | nucleus | 36.36 | 32.65 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 30.52 | 32.3 |
| CDY09571 | Canola | nucleus | 19.16 | 32.24 |
| CDX84285 | Canola | nucleus | 20.45 | 32.14 |
| CDY31636 | Canola | nucleus | 20.45 | 31.98 |
| CDY05192 | Canola | nucleus | 18.51 | 31.84 |
| CDY21741 | Canola | nucleus | 33.12 | 31.68 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 24.68 | 31.67 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 29.55 | 31.6 |
| EER99688 | Sorghum | nucleus | 30.84 | 31.56 |
| PGSC0003DMT400006358 | Potato | nucleus | 28.9 | 31.45 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 30.52 | 31.33 |
| Os07t0608200-01 | Rice | nucleus | 30.84 | 31.25 |
| Os03t0411100-01 | Rice | nucleus | 32.14 | 31.23 |
| KRH10071 | Soybean | nucleus | 29.87 | 30.98 |
| EER94699 | Sorghum | nucleus | 30.84 | 30.74 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 29.87 | 30.36 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 28.57 | 30.34 |
| Zm00001d006835_P002 | Maize | nucleus | 29.55 | 30.33 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 29.55 | 30.33 |
| Solyc03g121940.2.1 | Tomato | nucleus | 23.7 | 30.29 |
| Zm00001d022109_P003 | Maize | nucleus | 29.55 | 30.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.55 | 29.17 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 29.87 | 29.02 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 24.03 | 29.02 |
| CDY37330 | Canola | nucleus | 16.88 | 28.89 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 23.7 | 28.74 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 23.38 | 28.35 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 26.62 | 27.99 |
| CDX78492 | Canola | nucleus | 18.51 | 27.8 |
| Os02t0776400-01 | Rice | nucleus | 24.35 | 27.78 |
| OQU85816 | Sorghum | nucleus | 27.27 | 27.63 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 29.22 | 26.87 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 23.38 | 25.62 |
| Zm00001d027874_P004 | Maize | nucleus | 21.75 | 25.48 |
| CDY70458 | Canola | nucleus | 33.44 | 25.43 |
| CDX82223 | Canola | nucleus | 23.05 | 25.36 |
| CDX81837 | Canola | nucleus | 24.35 | 25.17 |
| CDY18809 | Canola | nucleus | 22.08 | 24.82 |
| CDY30854 | Canola | nucleus | 11.69 | 24.66 |
| CDY06393 | Canola | nucleus | 23.7 | 24.5 |
| CDX91161 | Canola | nucleus | 17.21 | 24.2 |
| CDY14662 | Canola | nucleus | 22.08 | 24.2 |
| CDX74133 | Canola | nucleus | 22.08 | 24.2 |
| CDX85686 | Canola | nucleus | 18.51 | 24.15 |
| CDY32398 | Canola | nucleus | 23.05 | 23.83 |
| CDX70480 | Canola | nucleus | 19.81 | 23.55 |
| CDY53967 | Canola | nucleus | 21.43 | 23.24 |
| CDX97206 | Canola | nucleus | 21.43 | 23.16 |
| CDY19591 | Canola | nucleus | 22.08 | 23.13 |
| CDX70098 | Canola | nucleus | 19.81 | 22.85 |
| CDX98930 | Canola | nucleus | 19.81 | 22.85 |
| Zm00001d026305_P002 | Maize | nucleus | 21.1 | 14.38 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078HND2 | UniProt:A0A078HND2 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDY39091 | ProteinID:CDY39091 |
| ProteinID:CDY39091.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00067245001 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | SMART:SM00521 | UniParc:UPI0002544557 | SEG:seg | : |
Description
BnaA01g29650DBnaA01g29650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HND2]
Coordinates
chrLK032440:+:100503..101926
Molecular Weight (calculated)
33770.9 Da
IEP (calculated)
10.432
GRAVY (calculated)
-0.638
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEFHSKDSL SSPTTSWGNS VLSNSNVQGS SSSAMTDNNN NNNTLSLTME MMSAHFPGMK QTGFQLQGHD DSSSTLSTGG GESSGDVASL GGHNSNNRYG
101: HNFVTHLSGH KEIAVSPSGS HPKSILSKVS QNSAPPPTIE ASWPLHGNCF MSFPYASQHM VQQHPQIGGL MIPSRILLPH NIPENEPIFV NAKQYQAILR
201: RRQHRAKLEA QNKLIKARKP YLHESRHLHA LKRARGSGGR FLNTKKLQES KSPPFLATSV KFRQREILGV AVGSSGPELT GNNMDMFQQD PQLRFSGYPS
301: NHHVSVLM
101: HNFVTHLSGH KEIAVSPSGS HPKSILSKVS QNSAPPPTIE ASWPLHGNCF MSFPYASQHM VQQHPQIGGL MIPSRILLPH NIPENEPIFV NAKQYQAILR
201: RRQHRAKLEA QNKLIKARKP YLHESRHLHA LKRARGSGGR FLNTKKLQES KSPPFLATSV KFRQREILGV AVGSSGPELT GNNMDMFQQD PQLRFSGYPS
301: NHHVSVLM
001: MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
Arabidopsis Description
NFYA6Nuclear transcription factor Y subunit A-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.