Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92762 | Sorghum | nucleus | 69.2 | 73.39 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 57.41 | 62.4 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 57.41 | 61.89 |
| Os03t0174900-01 | Rice | vacuole | 46.39 | 58.37 |
| Zm00001d029489_P002 | Maize | nucleus | 18.63 | 54.44 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 58.56 | 53.1 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 41.83 | 38.19 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 39.16 | 35.4 |
| Zm00001d022109_P003 | Maize | nucleus | 38.78 | 33.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.92 | 33.65 |
| Zm00001d006835_P002 | Maize | nucleus | 38.02 | 33.33 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 38.02 | 31.55 |
| KRH12475 | Soybean | nucleus | 25.48 | 29.39 |
| KRH02649 | Soybean | nucleus | 23.57 | 29.11 |
| KRH37469 | Soybean | nucleus | 24.71 | 28.51 |
| CDY02477 | Canola | nucleus | 24.71 | 28.51 |
| CDY56623 | Canola | nucleus | 25.1 | 28.21 |
| CDY69800 | Canola | nucleus | 24.71 | 28.14 |
| Zm00001d033602_P002 | Maize | nucleus | 28.14 | 28.03 |
| Bra014368.1-P | Field mustard | nucleus | 24.33 | 27.71 |
| CDY26138 | Canola | nucleus | 24.71 | 27.66 |
| KRH19255 | Soybean | nucleus | 24.33 | 27.47 |
| Bra037968.1-P | Field mustard | nucleus | 26.24 | 27.06 |
| CDY48025 | Canola | nucleus | 28.9 | 26.12 |
| Bra008052.1-P | Field mustard | nucleus | 28.9 | 26.12 |
| Bra030996.1-P | Field mustard | mitochondrion | 20.91 | 26.07 |
| Bra030899.1-P | Field mustard | nucleus | 24.71 | 25.9 |
| CDX96435 | Canola | nucleus | 31.18 | 25.47 |
| Bra016031.1-P | Field mustard | nucleus | 31.18 | 25.47 |
| KRH10071 | Soybean | nucleus | 28.14 | 24.92 |
| CDY51397 | Canola | nucleus | 26.24 | 24.21 |
| CDX82133 | Canola | nucleus | 29.28 | 24.14 |
| KRH06120 | Soybean | nucleus | 29.28 | 24.14 |
| PGSC0003DMT400055982 | Potato | nucleus | 19.77 | 24.07 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 26.62 | 23.89 |
| Zm00001d041491_P001 | Maize | nucleus | 25.86 | 23.53 |
| CDX72950 | Canola | nucleus | 30.42 | 23.32 |
| Solyc08g062210.2.1 | Tomato | nucleus | 28.52 | 23.08 |
| AT1G54160.1 | Thale cress | nucleus | 27.0 | 23.05 |
| CDY33084 | Canola | nucleus | 25.86 | 22.74 |
| AT1G72830.2 | Thale cress | nucleus | 28.9 | 22.29 |
| KRH47551 | Soybean | nucleus | 28.9 | 21.84 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 33.46 | 21.84 |
| CDY39091 | Canola | nucleus | 25.48 | 21.75 |
| AT3G14020.1 | Thale cress | nucleus | 25.48 | 21.75 |
| Bra021527.1-P | Field mustard | nucleus | 25.48 | 21.75 |
| CDY21741 | Canola | nucleus | 26.62 | 21.74 |
| CDY33253 | Canola | nucleus | 24.71 | 21.1 |
| AT1G17590.3 | Thale cress | nucleus | 26.24 | 21.04 |
| Zm00001d026305_P002 | Maize | nucleus | 36.12 | 21.02 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 19.01 | 20.83 |
| CDY70458 | Canola | nucleus | 31.18 | 20.25 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 25.48 | 19.94 |
| CDX81837 | Canola | nucleus | 20.15 | 17.79 |
| Zm00001d033215_P001 | Maize | nucleus | 20.53 | 16.77 |
| Zm00001d031092_P001 | Maize | nucleus | 19.77 | 15.76 |
| Zm00001d013676_P002 | Maize | nucleus | 19.01 | 14.66 |
| Zm00001d007882_P001 | Maize | nucleus | 16.35 | 14.63 |
| CDY30854 | Canola | nucleus | 4.18 | 7.53 |
Protein Annotations
| EntrezGene:100194365 | MapMan:15.5.51.1 | UniProt:A0A1D6JQA0 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016602 | InterPro:IPR001289 | InterPro:NFYA | ProteinID:ONL94165.1 | PFAM:PF02045 |
| ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF16 | SMART:SM00521 | UniParc:UPI000844C066 |
| EnsemblPlantsGene:Zm00001d027874 | EnsemblPlants:Zm00001d027874_P004 | EnsemblPlants:Zm00001d027874_T004 | SEG:seg | : | : |
Description
nuclear transcription factor y subunit a1 nuclear transcription factor y subunit a1
Coordinates
chr1:-:16038748..16041911
Molecular Weight (calculated)
28753.9 Da
IEP (calculated)
8.769
GRAVY (calculated)
-0.632
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPPHLTENG AVMIQFGHQM PDYDSPATQS TSETSHQEAS GMSEGSLNEH NNDHSGNLDG YSKSDENKMM SALSLGNPET AYAHNPKPDR TQSFAISYPY
101: ADPYYGGAVA AAYGPHAIMH PQLVGMVPSS RVPLPIEPAA EEPIYVNAKQ YHAILRRRQL RAKLEAENKL VKSRKVLTPS PHLIAVSTSH TRSRNSLSLS
201: VCVCVLCAAV PPRVSAPARD EESSGNRRAV PEHEAAAGVP RQRRLLGRAT RARDRERRPV HEA
101: ADPYYGGAVA AAYGPHAIMH PQLVGMVPSS RVPLPIEPAA EEPIYVNAKQ YHAILRRRQL RAKLEAENKL VKSRKVLTPS PHLIAVSTSH TRSRNSLSLS
201: VCVCVLCAAV PPRVSAPARD EESSGNRRAV PEHEAAAGVP RQRRLLGRAT RARDRERRPV HEA
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKVPYLHESR HVHALKRPRG SGGRFLNTKK LLQESEQAAA REQEQDKLGQ QVNRKTNMSR FEAHMLQNNK DRSSTTSGSD ITSVSDGADI
301: FGHTEFQFSG FPTPINRAML VHGQSNDMHG GGDMHHFSVH I
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKVPYLHESR HVHALKRPRG SGGRFLNTKK LLQESEQAAA REQEQDKLGQ QVNRKTNMSR FEAHMLQNNK DRSSTTSGSD ITSVSDGADI
301: FGHTEFQFSG FPTPINRAML VHGQSNDMHG GGDMHHFSVH I
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.