Factsheet for Bra021527.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39091	Canola	nucleus	100.0	100.0
CDY33253	Canola	nucleus	95.45	95.45
AT3G14020.1	Thale cress	nucleus	71.1	71.1
Zm00001d029489_P002	Maize	nucleus	17.53	60.0
Bra014368.1-P	Field mustard	nucleus	39.94	53.25
Bra030899.1-P	Field mustard	nucleus	41.23	50.6
Bra037968.1-P	Field mustard	nucleus	41.23	49.8
TraesCS4D01G289600.1	Wheat	nucleus	28.25	35.95
Bra008052.1-P	Field mustard	nucleus	33.77	35.74
TraesCS4B01G290400.1	Wheat	nucleus	28.25	35.66
Os03t0174900-01	Rice	vacuole	24.03	35.41
Bra016031.1-P	Field mustard	nucleus	37.01	35.4
EER92762	Sorghum	nucleus	28.25	35.08
KRH06120	Soybean	nucleus	36.04	34.8
KRH47551	Soybean	nucleus	39.29	34.77
Bra032395.1-P	Field mustard	nucleus	19.48	32.79
GSMUA_Achr2P21730_001	Banana	nucleus	30.52	32.3
Bra005397.1-P	Field mustard	nucleus	20.45	31.98
GSMUA_Achr8P16700_001	Banana	nucleus	29.55	31.6
EER99688	Sorghum	nucleus	30.84	31.56
PGSC0003DMT400006358	Potato	nucleus	28.9	31.45
HORVU2Hr1G032130.4	Barley	nucleus	30.52	31.33
Os07t0608200-01	Rice	nucleus	30.84	31.25
Os03t0411100-01	Rice	nucleus	32.14	31.23
KRH10071	Soybean	nucleus	29.87	30.98
EER94699	Sorghum	nucleus	30.84	30.74
TraesCS2A01G172500.1	Wheat	nucleus	29.87	30.36
HORVU4Hr1G075830.4	Barley	nucleus	28.57	30.34
Zm00001d006835_P002	Maize	nucleus	29.55	30.33
TraesCS2B01G198700.1	Wheat	nucleus	29.55	30.33
Solyc03g121940.2.1	Tomato	nucleus	23.7	30.29
Zm00001d022109_P003	Maize	nucleus	29.55	30.23
GSMUA_AchrUn_...	Banana	nucleus	29.55	29.17
GSMUA_Achr8P30700_001	Banana	nucleus	29.87	29.02
TraesCS6B01G366100.2	Wheat	nucleus	24.03	29.02
Bra030996.1-P	Field mustard	mitochondrion	19.81	28.91
Bra023913.1-P	Field mustard	nucleus	16.88	28.89
TraesCS6D01G315300.1	Wheat	nucleus	23.7	28.74
TraesCS6A01G335400.1	Wheat	nucleus	23.38	28.35
Zm00001d018255_P001	Maize	endoplasmic reticulum, extracellular, golgi	26.62	27.99
Os02t0776400-01	Rice	nucleus	24.35	27.78
OQU85816	Sorghum	nucleus	27.27	27.63
TraesCS2D01G179600.2	Wheat	nucleus	29.22	26.87
HORVU6Hr1G081080.12	Barley	nucleus	23.38	25.62
Bra006165.1-P	Field mustard	nucleus	21.1	25.59
Zm00001d027874_P004	Maize	nucleus	21.75	25.48
Bra031242.1-P	Field mustard	nucleus	23.7	24.75
Bra023378.1-P	Field mustard	nucleus	19.16	24.58
Bra040529.1-P	Field mustard	nucleus	22.08	24.2
Bra001164.1-P	Field mustard	nucleus	21.43	23.49
Bra008878.1-P	Field mustard	nucleus	21.1	22.97
Bra009200.1-P	Field mustard	nucleus	19.81	22.85
Bra001806.1-P	Field mustard	nucleus	22.73	22.73
Zm00001d026305_P002	Maize	nucleus	21.1	14.38

Protein Annotations

MapMan:15.5.51.1	EnsemblPlantsGene:Bra021527	EnsemblPlants:Bra021527.1	EnsemblPlants:Bra021527.1-P	InterPro:CCAAT-binding_factor_CS	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0010262	GO:GO:0016602	GO:GO:0048316	InterPro:IPR001289	UniProt:M4DYD1
InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632
PANTHER:PTHR12632:SF8	SMART:SM00521	UniParc:UPI0002544557	SEG:seg	:	:

Description

AT3G14020 (E=2e-081) NF-YA6 | NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6); transcription factor

Coordinates

chrA01:-:24734104..24735420

Molecular Weight (calculated)

33770.9 Da

IEP (calculated)

10.432

GRAVY (calculated)

-0.638

Length

308 amino acids

Sequence
(BLAST)

001: MQEFHSKDSL SSPTTSWGNS VLSNSNVQGS SSSAMTDNNN NNNTLSLTME MMSAHFPGMK QTGFQLQGHD DSSSTLSTGG GESSGDVASL GGHNSNNRYG
101: HNFVTHLSGH KEIAVSPSGS HPKSILSKVS QNSAPPPTIE ASWPLHGNCF MSFPYASQHM VQQHPQIGGL MIPSRILLPH NIPENEPIFV NAKQYQAILR
201: RRQHRAKLEA QNKLIKARKP YLHESRHLHA LKRARGSGGR FLNTKKLQES KSPPFLATSV KFRQREILGV AVGSSGPELT GNNMDMFQQD PQLRFSGYPS
301: NHHVSVLM

Best Arabidopsis Sequence Match ( AT3G14020.2 )
(BLAST)

001: MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM

Arabidopsis Description

NFYA6Nuclear transcription factor Y subunit A-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.