Factsheet for Bra008878.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53967	Canola	nucleus	98.59	98.24
CDX97206	Canola	nucleus	98.23	97.54
Bra023378.1-P	Field mustard	nucleus	66.78	78.75
Bra006165.1-P	Field mustard	nucleus	70.67	78.74
KRG98391	Soybean	nucleus	51.59	43.2
KRH46473	Soybean	nucleus	50.88	42.86
VIT_06s0004g02270.t01	Wine grape	nucleus	45.58	42.16
Solyc11g065700.1.1	Tomato	nucleus	41.34	39.0
PGSC0003DMT400018959	Potato	nucleus	40.99	38.67
KRH73967	Soybean	nucleus	41.34	38.11
KRH14162	Soybean	nucleus	40.64	37.46
Bra023913.1-P	Field mustard	nucleus	23.67	37.22
Bra031242.1-P	Field mustard	nucleus	38.16	36.61
PGSC0003DMT400027785	Potato	nucleus	38.87	35.48
Solyc01g008490.2.1	Tomato	nucleus	38.87	35.26
Bra001806.1-P	Field mustard	nucleus	37.46	34.42
Bra032395.1-P	Field mustard	nucleus	21.91	33.88
Os03t0696300-01	Rice	nucleus	30.74	33.46
TraesCS4A01G277300.1	Wheat	nucleus	31.45	33.46
TraesCS4D01G033700.1	Wheat	nucleus	31.1	33.08
Zm00001d033602_P002	Maize	nucleus	29.68	31.82
KXG37797	Sorghum	nucleus	29.33	31.09
Bra005397.1-P	Field mustard	nucleus	20.49	29.44
GSMUA_Achr4P03600_001	Banana	nucleus	30.04	28.52
Bra014368.1-P	Field mustard	nucleus	22.61	27.71
Bra037968.1-P	Field mustard	nucleus	24.38	27.06
GSMUA_Achr3P29730_001	Banana	nucleus	30.39	26.88
Bra030899.1-P	Field mustard	nucleus	23.32	26.29
Bra008052.1-P	Field mustard	nucleus	25.44	24.74
Bra009200.1-P	Field mustard	nucleus	22.97	24.34
GSMUA_Achr4P11090_001	Banana	vacuole	30.74	23.77
Bra040529.1-P	Field mustard	nucleus	23.32	23.49
Bra001164.1-P	Field mustard	nucleus	22.61	22.78
Bra016031.1-P	Field mustard	nucleus	25.44	22.36
Bra030996.1-P	Field mustard	mitochondrion	16.25	21.8
Bra021527.1-P	Field mustard	nucleus	22.97	21.1

Protein Annotations

MapMan:15.5.51.1	EnsemblPlantsGene:Bra008878	EnsemblPlants:Bra008878.1	EnsemblPlants:Bra008878.1-P	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	InterPro:IPR001289	UniProt:M4CXD1	InterPro:NFYA
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF14
SMART:SM00521	UniParc:UPI0002543D27	SEG:seg	:	:	:

Description

AT5G12840 (E=9e-090) HAP2A, EMB2220, ATHAP2A, NF-YA1 | NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor

Coordinates

chrA10:+:14251324..14252934

Molecular Weight (calculated)

30734.3 Da

IEP (calculated)

6.708

GRAVY (calculated)

-1.007

Length

283 amino acids

Sequence
(BLAST)

001: MQSKSGRGNE EEANHHHADQ QQQQPIMYPE PWWKTNAFGV IPQERPSSGI PSNSSSLDCP NGSESNDVHS ASEDGGGAGN GENDAAWKDS QAVTSSPSVD
101: QHGMEGSDPA HVAASMHGMH NQQPVQPPEL VGHYMACVPP NPYQDPYYAG MMGAYGHQPL GFRPYLGMPR ERTALPLDIT QPVYVNAKQY EGILRRRKAR
201: AKAELERKVI NRKPYLHESR HKHAMRRARA SGGRFAKKTE AEAAAEDAAA AGREREKGSA TNSSGSEPVE TDSNETLNSS GAP

Best Arabidopsis Sequence Match ( AT5G12840.1 )
(BLAST)

001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP

Arabidopsis Description

NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.