Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85686 | Canola | nucleus | 95.0 | 96.61 |
| Bra006165.1-P | Field mustard | nucleus | 76.25 | 72.05 |
| AT5G12840.3 | Thale cress | nucleus | 78.75 | 69.49 |
| Bra008878.1-P | Field mustard | nucleus | 78.75 | 66.78 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 45.42 | 35.62 |
| KRG98391 | Soybean | nucleus | 50.0 | 35.5 |
| KRH46473 | Soybean | nucleus | 49.17 | 35.12 |
| Solyc11g065700.1.1 | Tomato | nucleus | 43.33 | 34.67 |
| PGSC0003DMT400018959 | Potato | nucleus | 43.33 | 34.67 |
| Bra023913.1-P | Field mustard | nucleus | 25.83 | 34.44 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 36.67 | 33.08 |
| Bra031242.1-P | Field mustard | nucleus | 40.42 | 32.88 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 36.25 | 32.71 |
| PGSC0003DMT400027785 | Potato | nucleus | 42.08 | 32.58 |
| Bra001806.1-P | Field mustard | nucleus | 41.67 | 32.47 |
| Solyc01g008490.2.1 | Tomato | nucleus | 41.67 | 32.05 |
| Os03t0696300-01 | Rice | nucleus | 34.58 | 31.92 |
| KXG37797 | Sorghum | nucleus | 35.0 | 31.46 |
| Bra032395.1-P | Field mustard | nucleus | 23.75 | 31.15 |
| KRH73967 | Soybean | nucleus | 39.17 | 30.62 |
| Zm00001d033602_P002 | Maize | nucleus | 33.33 | 30.3 |
| KRH14162 | Soybean | nucleus | 38.75 | 30.29 |
| Bra005397.1-P | Field mustard | nucleus | 22.92 | 27.92 |
| Bra014368.1-P | Field mustard | nucleus | 26.67 | 27.71 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 31.67 | 25.5 |
| Bra030899.1-P | Field mustard | nucleus | 26.25 | 25.1 |
| Bra037968.1-P | Field mustard | nucleus | 26.67 | 25.1 |
| Bra030996.1-P | Field mustard | mitochondrion | 20.42 | 23.22 |
| Bra009200.1-P | Field mustard | nucleus | 25.83 | 23.22 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 30.42 | 22.81 |
| Bra040529.1-P | Field mustard | nucleus | 26.67 | 22.78 |
| Bra008052.1-P | Field mustard | nucleus | 27.5 | 22.68 |
| Bra001164.1-P | Field mustard | nucleus | 25.0 | 21.35 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 32.5 | 21.31 |
| Bra016031.1-P | Field mustard | nucleus | 27.08 | 20.19 |
| Bra021527.1-P | Field mustard | nucleus | 24.58 | 19.16 |
Protein Annotations
| MapMan:15.5.51.1 | EnsemblPlantsGene:Bra023378 | EnsemblPlants:Bra023378.1 | EnsemblPlants:Bra023378.1-P | InterPro:CCAAT-binding_factor_CS | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009987 | GO:GO:0010262 | GO:GO:0016602 | GO:GO:0048316 | GO:GO:0048510 | GO:GO:0055046 |
| InterPro:IPR001289 | UniProt:M4E3M5 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 |
| PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI000254340D | SEG:seg |
Description
AT5G12840 (E=2e-064) HAP2A, ATHAP2A, NF-YA1 | NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor
Coordinates
chrA02:-:3087710..3088811
Molecular Weight (calculated)
26537.6 Da
IEP (calculated)
6.800
GRAVY (calculated)
-1.137
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSKSGGRGN EEEVNQQQPM MMYPDPWWKN NSFGGVLPQE RPSGSESNDV HSPSEDDGGP CKDSQAATSP PPPPVDNHGE EGNDPTHSMD DQQVVQPPEL
101: VGHYIACVPN PYQDAYYGGM MGAYGHHQPL GFRPYPGMAR ERTALPLDTT QEPVYVNAKQ YEGILRRRKA RAKAELERKV INRKPYLHES RHKHAMKRVR
201: ASGGRFAKKS EAEAAEDAAA ARRERSSATN SSGSEQPVDS
101: VGHYIACVPN PYQDAYYGGM MGAYGHHQPL GFRPYPGMAR ERTALPLDTT QEPVYVNAKQ YEGILRRRKA RAKAELERKV INRKPYLHES RHKHAMKRVR
201: ASGGRFAKKS EAEAAEDAAA ARRERSSATN SSGSEQPVDS
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.