Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023378.1-P | Field mustard | nucleus | 69.49 | 78.75 |
| CDX85686 | Canola | nucleus | 66.18 | 76.27 |
| CDX91161 | Canola | nucleus | 57.72 | 71.69 |
| KRG98391 | Soybean | nucleus | 54.78 | 44.08 |
| KRH46473 | Soybean | nucleus | 53.68 | 43.45 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 47.43 | 42.16 |
| PGSC0003DMT400018959 | Potato | nucleus | 43.75 | 39.67 |
| Solyc11g065700.1.1 | Tomato | nucleus | 43.75 | 39.67 |
| KRH73967 | Soybean | nucleus | 44.49 | 39.41 |
| KRH14162 | Soybean | nucleus | 43.75 | 38.76 |
| Solyc01g008490.2.1 | Tomato | nucleus | 41.91 | 36.54 |
| AT3G20910.1 | Thale cress | nucleus | 40.44 | 36.3 |
| PGSC0003DMT400027785 | Potato | nucleus | 41.18 | 36.13 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 33.46 | 34.21 |
| Os03t0696300-01 | Rice | nucleus | 32.35 | 33.85 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 33.09 | 33.83 |
| Zm00001d033602_P002 | Maize | nucleus | 32.72 | 33.71 |
| KXG37797 | Sorghum | nucleus | 33.09 | 33.71 |
| AT1G30500.2 | Thale cress | nucleus | 21.69 | 31.05 |
| AT2G34720.1 | Thale cress | nucleus | 21.69 | 29.8 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 30.88 | 28.19 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 31.62 | 26.88 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 32.72 | 24.32 |
| AT5G06510.2 | Thale cress | nucleus | 23.9 | 24.16 |
| AT1G54160.1 | Thale cress | nucleus | 25.74 | 22.73 |
| AT1G72830.2 | Thale cress | nucleus | 27.57 | 21.99 |
| AT1G17590.3 | Thale cress | nucleus | 26.1 | 21.65 |
| AT3G14020.1 | Thale cress | nucleus | 24.26 | 21.43 |
| AT3G05690.2 | Thale cress | mitochondrion | 24.63 | 20.18 |
Protein Annotations
| MapMan:15.5.51.1 | EntrezGene:831124 | ProteinID:AED91817.1 | ProteinID:AED91818.1 | ProteinID:AED91819.1 | ProteinID:AED91820.1 |
| ProteinID:ANM71110.1 | ArrayExpress:AT5G12840 | EnsemblPlantsGene:AT5G12840 | RefSeq:AT5G12840 | TAIR:AT5G12840 | RefSeq:AT5G12840-TAIR-G |
| EnsemblPlants:AT5G12840.3 | TAIR:AT5G12840.3 | EMBL:BT025801 | ProteinID:CAB88248.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0010262 | GO:GO:0016602 | GO:GO:0048316 | GO:GO:0048510 |
| GO:GO:0055046 | Symbol:HAP2A | InterPro:IPR001289 | InterPro:NFYA | RefSeq:NP_001318552.1 | RefSeq:NP_568282.1 |
| RefSeq:NP_850811.1 | RefSeq:NP_974773.1 | RefSeq:NP_974774.1 | PFAM:PF02045 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF14 |
| UniProt:Q1ECD3 | UniProt:Q9LXV5 | SMART:SM00521 | UniParc:UPI00000A308F | EMBL:Y13720 | SEG:seg |
Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
Coordinates
chr5:-:4050780..4053669
Molecular Weight (calculated)
30039.6 Da
IEP (calculated)
6.683
GRAVY (calculated)
-1.053
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.