Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G033700.1 | Wheat | nucleus | 92.48 | 92.48 |
| Os03t0696300-01 | Rice | nucleus | 69.92 | 71.54 |
| KXG37797 | Sorghum | nucleus | 69.17 | 68.91 |
| Zm00001d033602_P002 | Maize | nucleus | 67.67 | 68.18 |
| CDX78492 | Canola | nucleus | 30.08 | 39.02 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 30.08 | 38.1 |
| Bra023378.1-P | Field mustard | nucleus | 33.08 | 36.67 |
| CDX85686 | Canola | nucleus | 32.33 | 36.44 |
| CDX91161 | Canola | nucleus | 29.7 | 36.07 |
| Bra006165.1-P | Field mustard | nucleus | 34.21 | 35.83 |
| KRH27472 | Soybean | nucleus | 40.23 | 35.31 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 38.72 | 34.56 |
| CDX70480 | Canola | nucleus | 33.08 | 33.98 |
| Bra023913.1-P | Field mustard | nucleus | 22.93 | 33.89 |
| CDY37330 | Canola | nucleus | 22.93 | 33.89 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 40.6 | 33.75 |
| AT5G12840.3 | Thale cress | nucleus | 34.21 | 33.46 |
| KRH20817 | Soybean | nucleus | 37.59 | 32.89 |
| CDY53967 | Canola | nucleus | 34.21 | 32.04 |
| CDX97206 | Canola | nucleus | 34.21 | 31.93 |
| VIT_08s0007g08250.t01 | Wine grape | nucleus | 42.48 | 31.92 |
| Bra008878.1-P | Field mustard | nucleus | 33.46 | 31.45 |
| CDX82223 | Canola | nucleus | 32.71 | 31.07 |
| Solyc10g079150.1.1 | Tomato | nucleus | 25.56 | 31.05 |
| KRG98391 | Soybean | nucleus | 38.72 | 30.47 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 34.96 | 30.39 |
| KRH46473 | Soybean | nucleus | 38.35 | 30.36 |
| CDY06393 | Canola | nucleus | 33.83 | 30.2 |
| PGSC0003DMT400021053 | Potato | nucleus | 27.07 | 30.0 |
| Bra031242.1-P | Field mustard | nucleus | 32.71 | 29.49 |
| AT3G20910.1 | Thale cress | nucleus | 33.46 | 29.37 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 40.23 | 29.23 |
| CDY32398 | Canola | nucleus | 32.33 | 28.86 |
| CDY19591 | Canola | nucleus | 31.58 | 28.57 |
| Bra001806.1-P | Field mustard | nucleus | 32.33 | 27.92 |
| VIT_13s0064g00860.t01 | Wine grape | nucleus | 42.48 | 27.9 |
| KRH73967 | Soybean | nucleus | 31.95 | 27.69 |
| KRH14162 | Soybean | nucleus | 31.58 | 27.36 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 30.45 | 26.73 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 23.68 | 24.8 |
| TraesCS5A01G373500.1 | Wheat | nucleus | 27.82 | 22.7 |
| TraesCS5A01G029900.1 | Wheat | nucleus | 28.57 | 22.29 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF30 | SMART:SM00521 | EnsemblPlantsGene:TraesCS4A01G277300 | EnsemblPlants:TraesCS4A01G277300.1 | SEG:seg |
Description
No Description!
Coordinates
chr4A:-:585376976..585379886
Molecular Weight (calculated)
28725.6 Da
IEP (calculated)
9.820
GRAVY (calculated)
-0.869
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRPGESNL VEPRGLPSGM AMQPWWTGTG FGAVSPAVVA PGSGAGISLS SNPLGGGAGK GATTQGKKKT ADDDPRAQSS DDDSQRSGEP KDGSFEEENQ
101: RATSRMPALA TDYLAPYSHL ELNQPMASAT YPYPDAYYTG MVGPYGAQAV AHFQLPGLTH PRMPLPLEVS EEPVYVNAKQ YHGILRRRQS RAKAELERKA
201: IKARKPYLHE SRHQHAMRRA RGTGGRFLNT KKDENGASNG GRTEANKGEQ SSDYLRVPPD LHLRQA
101: RATSRMPALA TDYLAPYSHL ELNQPMASAT YPYPDAYYTG MVGPYGAQAV AHFQLPGLTH PRMPLPLEVS EEPVYVNAKQ YHGILRRRQS RAKAELERKA
201: IKARKPYLHE SRHQHAMRRA RGTGGRFLNT KKDENGASNG GRTEANKGEQ SSDYLRVPPD LHLRQA
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.