Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G052200.2 | Wheat | nucleus | 99.05 | 98.58 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 95.71 | 97.1 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 94.76 | 92.99 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 69.52 | 91.82 |
| Os12t0613000-01 | Rice | nucleus | 75.71 | 73.27 |
| EES17387 | Sorghum | nucleus | 73.33 | 72.3 |
| Zm00001d041491_P001 | Maize | nucleus | 70.0 | 50.87 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 45.71 | 46.15 |
| PGSC0003DMT400054416 | Potato | nucleus | 44.29 | 44.29 |
| Solyc02g069860.2.1 | Tomato | nucleus | 43.81 | 44.23 |
| KRH42997 | Soybean | nucleus | 43.33 | 44.17 |
| PGSC0003DMT400030813 | Potato | nucleus | 41.9 | 43.56 |
| KRH11777 | Soybean | nucleus | 40.95 | 41.95 |
| AT1G30500.2 | Thale cress | nucleus | 37.62 | 41.58 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 43.81 | 40.35 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 44.76 | 40.17 |
| KRH59113 | Soybean | nucleus | 41.43 | 40.09 |
| CDY09571 | Canola | nucleus | 34.76 | 39.89 |
| CDY02298 | Canola | nucleus | 34.76 | 39.89 |
| Bra032395.1-P | Field mustard | nucleus | 34.76 | 39.89 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 43.81 | 39.32 |
| KRH36784 | Soybean | nucleus | 40.95 | 39.27 |
| CDX84285 | Canola | nucleus | 35.71 | 38.27 |
| CDY31636 | Canola | nucleus | 35.71 | 38.07 |
| Bra005397.1-P | Field mustard | nucleus | 35.71 | 38.07 |
| AT2G34720.1 | Thale cress | nucleus | 34.76 | 36.87 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 38.1 | 30.08 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 32.38 | 26.77 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 30.95 | 21.45 |
| TraesCS5A01G373500.1 | Wheat | nucleus | 29.05 | 18.71 |
| TraesCS5A01G029900.1 | Wheat | nucleus | 29.05 | 17.89 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF18 | SMART:SM00521 | EnsemblPlantsGene:TraesCS5A01G043300 | EnsemblPlants:TraesCS5A01G043300.2 | SEG:seg |
Description
No Description!
Coordinates
chr5A:+:39733250..39737626
Molecular Weight (calculated)
22572.1 Da
IEP (calculated)
8.437
GRAVY (calculated)
-0.900
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVADGVSG DHRADEQQKQ AAAQGNQEEA PATSIGSQAM VATPSTDYVT PYGHQEACHA MGQIAYPTVD PFYGSLYAAY GGQPMMHPPM VGMHAAAIPL
101: PTDAIEEPVY VNAKQYNAIL RRRQSRAKAE SERKLIKGRK PYLHESRHQH ALKRARGAGG RFLNAKSDDN EEHSDSSSKD KQNGVAPRSS GQSSQSPKGA
201: TSADKSGNHE
101: PTDAIEEPVY VNAKQYNAIL RRRQSRAKAE SERKLIKGRK PYLHESRHQH ALKRARGAGG RFLNAKSDDN EEHSDSSSKD KQNGVAPRSS GQSSQSPKGA
201: TSADKSGNHE
001: MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SARNYESIVT SLVYSDPGTT NSMAPGQYPY PDPYYRSIFA PPPQPYTGVH LQLMGVQQQG VPLPSDAVEE
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
Arabidopsis Description
NFYA7Nuclear transcription factor Y subunit A-7 [Source:UniProtKB/Swiss-Prot;Acc:Q84JP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.