Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 93.4 | 91.88 |
| TraesCS4B01G019600.1 | Wheat | mitochondrion | 91.75 | 89.68 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 85.48 | 89.31 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 84.49 | 88.28 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 85.81 | 84.69 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 74.26 | 71.89 |
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 72.61 | 71.43 |
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 73.6 | 71.02 |
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 48.18 | 53.87 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 45.21 | 52.09 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 47.19 | 43.33 |
| EER91098 | Sorghum | nucleus | 48.84 | 41.69 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 33.33 | 40.89 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 25.08 | 40.43 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 32.01 | 40.25 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 30.03 | 39.57 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 31.35 | 38.93 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 35.64 | 37.76 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 36.3 | 36.91 |
| CDX94520 | Canola | cytosol | 27.39 | 35.47 |
| CDY07541 | Canola | cytosol | 27.39 | 35.47 |
| CDY09318 | Canola | cytosol | 27.39 | 35.47 |
| CDY21311 | Canola | cytosol | 27.39 | 35.47 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 36.63 | 34.58 |
| Zm00001d033419_P001 | Maize | plastid | 31.02 | 33.57 |
| Bra035092.1-P | Field mustard | nucleus | 34.98 | 33.54 |
| CDX87407 | Canola | nucleus | 34.98 | 33.54 |
| KRH43767 | Soybean | nucleus | 27.39 | 32.81 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 33.33 | 32.69 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 32.67 | 32.67 |
| AT4G19700.1 | Thale cress | cytosol | 32.01 | 31.91 |
| CDX88507 | Canola | nucleus | 31.35 | 31.88 |
| KRH11729 | Soybean | nucleus | 32.67 | 31.63 |
| KRH36722 | Soybean | nucleus | 32.01 | 31.29 |
| PGSC0003DMT400062617 | Potato | nucleus | 30.69 | 31.0 |
| AT5G45100.1 | Thale cress | cytosol | 30.03 | 30.95 |
| KRG89416 | Soybean | nucleus | 32.01 | 30.89 |
| CDY01615 | Canola | cytosol | 31.02 | 30.82 |
| CDY71607 | Canola | cytosol | 31.02 | 30.72 |
| Bra012532.1-P | Field mustard | nucleus | 31.02 | 30.72 |
| Solyc02g031710.2.1 | Tomato | nucleus | 31.02 | 30.32 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 32.01 | 30.31 |
| CDY26402 | Canola | cytosol | 29.37 | 30.07 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 29.37 | 30.07 |
| Bra034718.1-P | Field mustard | nucleus | 32.67 | 29.38 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 31.02 | 29.1 |
| AT3G12920.1 | Thale cress | nucleus | 32.01 | 28.96 |
| CDY71192 | Canola | cytosol | 26.73 | 28.93 |
| CDY51918 | Canola | cytosol | 27.39 | 28.92 |
| Bra013423.1-P | Field mustard | nucleus | 28.05 | 28.72 |
| CDX79294 | Canola | nucleus | 28.71 | 28.62 |
| Bra001477.1-P | Field mustard | nucleus | 32.01 | 28.53 |
| CDY64561 | Canola | nucleus | 32.01 | 28.53 |
| CDY13070 | Canola | cytosol | 26.07 | 28.32 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 26.07 | 28.32 |
| CDY43390 | Canola | cytosol | 30.36 | 28.31 |
| Bra039354.1-P | Field mustard | cytosol | 30.36 | 28.31 |
| CDX82568 | Canola | nucleus | 31.68 | 28.24 |
| KRH13682 | Soybean | nucleus | 31.35 | 28.19 |
| CDY24237 | Canola | nucleus | 30.03 | 28.09 |
| AT1G79110.1 | Thale cress | nucleus | 33.0 | 27.93 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 25.41 | 27.3 |
| CDY18062 | Canola | cytosol | 25.41 | 27.3 |
| CDY46345 | Canola | cytosol | 25.08 | 26.95 |
| TraesCS2D01G287900.1 | Wheat | cytosol | 27.72 | 26.25 |
| TraesCS2D01G288000.1 | Wheat | cytosol | 27.39 | 25.7 |
| Solyc02g069180.2.1 | Tomato | plastid | 22.77 | 24.38 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 24.75 | 23.36 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 24.42 | 22.16 |
| CDY23552 | Canola | cytosol | 14.85 | 20.74 |
| TraesCS4D01G215600.1 | Wheat | plastid | 16.83 | 15.04 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G018100.1 | EnsemblPlantsGene:TraesCS4D01G018100 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF12 | PFscan:PS50089 | PIRSF:PIRSF036836 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:7873059..7874058
Molecular Weight (calculated)
32020.1 Da
IEP (calculated)
6.685
GRAVY (calculated)
-0.183
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDLQRLRH MLLANRPGAS AAAMPASGPC YGAAVTGQQL GCQPYADIFT PPPTMSAADQ YSELLALAAA DLARKGDGAQ EMTSGNKRRR VDEGASSSVL
101: GEVLAAHAQQ QAVAVDHILH RHARKMWAAL AEQRRSHLRL IVSTVEARAA KRLKAKDEEI ERVRGMNWAL EERLRSLYME AQMWRDVAQS HEAAASVLRA
201: DLQRVLDAQA VRGGAGGDGD GQDDAESCCW GENQVPVCAE EEAEVGTPAT TGVGRCKGCG EGAAVVLLLP CRHLCVCAPC AASAQACPSC GCAKNGSVCV
301: NFS
101: GEVLAAHAQQ QAVAVDHILH RHARKMWAAL AEQRRSHLRL IVSTVEARAA KRLKAKDEEI ERVRGMNWAL EERLRSLYME AQMWRDVAQS HEAAASVLRA
201: DLQRVLDAQA VRGGAGGDGD GQDDAESCCW GENQVPVCAE EEAEVGTPAT TGVGRCKGCG EGAAVVLLLP CRHLCVCAPC AASAQACPSC GCAKNGSVCV
301: NFS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.