Factsheet for Bra001477.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82568	Canola	nucleus	97.94	97.94
Bra039354.1-P	Field mustard	cytosol	76.76	80.31
AT3G12920.1	Thale cress	nucleus	77.65	78.81
Bra034718.1-P	Field mustard	nucleus	76.18	76.85
KRH43767	Soybean	nucleus	34.41	46.25
GSMUA_Achr7P00850_001	Banana	plastid	30.29	44.78
VIT_19s0027g00740.t01	Wine grape	nucleus	40.59	44.66
Bra035092.1-P	Field mustard	nucleus	41.47	44.62
KRH13682	Soybean	nucleus	42.06	42.43
GSMUA_Achr5P02100_001	Banana	plastid	30.0	41.8
GSMUA_Achr2P13160_001	Banana	plastid	30.29	41.7
GSMUA_Achr4P32070_001	Banana	nucleus	35.0	41.61
GSMUA_Achr4P23050_001	Banana	nucleus	21.47	38.83
Bra012532.1-P	Field mustard	nucleus	34.41	38.24
GSMUA_Achr4P28300_001	Banana	nucleus	27.06	38.17
Bra013423.1-P	Field mustard	nucleus	32.94	37.84
GSMUA_Achr6P31690_001	Banana	nucleus	32.94	37.58
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	32.06	36.82
GSMUA_Achr9P09830_001	Banana	nucleus	32.94	34.89
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	28.24	34.04
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	27.06	32.97
TraesCS7D01G431300.1	Wheat	mitochondrion	30.0	32.59
TraesCS3D01G441300.1	Wheat	mitochondrion	27.65	32.41
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	31.18	32.12
TraesCS3D01G441000.1	Wheat	mitochondrion	27.35	32.07
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	28.53	32.01
HORVU4Hr1G003180.3	Barley	mitochondrion	28.82	31.92
TraesCS3B01G484600.1	Wheat	cytosol	25.59	31.64
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	28.24	31.27
TraesCS3A01G448500.1	Wheat	mitochondrion	26.76	31.06
EER91098	Sorghum	nucleus	31.76	30.42
TraesCS4B01G019600.1	Wheat	mitochondrion	27.65	30.32
TraesCS7A01G442300.1	Wheat	mitochondrion	28.24	30.28
HORVU7Hr1G100540.2	Barley	mitochondrion	27.06	30.26
TraesCS7A01G442100.1	Wheat	mitochondrion	27.94	30.25
TraesCS4A01G293700.1	Wheat	mitochondrion	27.35	30.19
TraesCS7B01G340700.1	Wheat	mitochondrion	27.35	29.81
TraesCS7B01G340600.1	Wheat	mitochondrion	27.06	29.49
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	20.59	29.29
TraesCS7B01G340500.1	Wheat	mitochondrion	26.47	28.57
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	22.65	28.41
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	25.88	28.03
HORVU6Hr1G021960.1	Barley	plastid	21.47	27.97
HORVU6Hr1G021880.1	Barley	plastid	21.47	27.97
TraesCS7D01G431200.1	Wheat	mitochondrion	25.29	27.92
TraesCS6A01G120700.1	Wheat	nucleus	21.18	27.38
TraesCS7A01G441900.1	Wheat	mitochondrion	25.29	27.22
TraesCS6B01G149100.1	Wheat	nucleus	20.88	27.0
TraesCS6D01G110700.1	Wheat	nucleus	20.88	27.0
Bra040255.1-P	Field mustard	nucleus	17.94	26.64
Zm00001d033419_P001	Maize	plastid	21.76	26.43
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	16.18	24.89
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	17.06	24.68
Bra034672.1-P	Field mustard	cytosol	17.94	24.3
Bra019910.1-P	Field mustard	nucleus, plastid	20.59	23.03
Bra017511.1-P	Field mustard	nucleus	20.29	22.85
Bra014051.1-P	Field mustard	nucleus	20.88	22.83
Bra031495.1-P	Field mustard	nucleus	21.47	22.32
Bra024967.1-P	Field mustard	plastid	16.18	22.27
Bra018428.1-P	Field mustard	nucleus	20.88	21.01
Bra012650.1-P	Field mustard	nucleus	17.65	17.19
Bra022093.1-P	Field mustard	nucleus	10.59	16.36

Protein Annotations

EnsemblPlants:Bra001477.1	EnsemblPlants:Bra001477.1-P	EnsemblPlantsGene:Bra001477	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF7	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI0002540810	UniProt:M4CB97	MapMan:35.1

Description

AT3G12920 (E=2e-137) | protein binding / zinc ion binding

Coordinates

chrA03:-:16564261..16565366

Molecular Weight (calculated)

38174.2 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.527

Length

340 amino acids

Sequence
(BLAST)

001: MAVEAHHLNP LCSPNVAGDF LYRDMMHPLE ANSFVYNNQI RYGNVPAATT PFNPTAECQT SLLNPTYNIS PVDYLVHQSI KPTIHSVDSS VTFNSENNGN
101: NVDFLRHGSS SSLRKRRREE SVLVSPMPSQ KRSTDPLMFL GQDLSSNVQQ HSFDIDRLIS NHVEIMRLEI EEKRRTQGRK IMEAIQQGLM KTLRAKDEEI
201: NHIQKLNLYL EEKVKSLCVE NQVWRDVAQS NEATVNALRS NLQQVLADVE RREEPTAADD TQSCCGSNDE GDSKEKWRLV GEAQDTMTRT MCRSCGKGEA
301: SVLLLPCRHM CLCSVCGSSV YTCPVCKSPK NASLHVNLSS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.