Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 90.55 | 85.86 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 90.18 | 85.52 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 90.55 | 84.98 |
| TraesCS4B01G019600.1 | Wheat | mitochondrion | 84.73 | 75.16 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 81.45 | 72.96 |
| TraesCS7B01G340600.1 | Wheat | mitochondrion | 74.55 | 65.71 |
| TraesCS7B01G340700.1 | Wheat | mitochondrion | 74.18 | 65.38 |
| TraesCS7B01G340500.1 | Wheat | mitochondrion | 74.18 | 64.76 |
| TraesCS6B01G149100.1 | Wheat | nucleus | 46.55 | 48.67 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 50.91 | 42.42 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 33.09 | 39.57 |
| EER91098 | Sorghum | nucleus | 50.91 | 39.44 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 26.91 | 39.36 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 34.55 | 38.46 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 33.09 | 37.76 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 33.09 | 37.3 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 37.09 | 35.66 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 36.73 | 33.89 |
| CDX94520 | Canola | cytosol | 28.36 | 33.33 |
| CDY07541 | Canola | cytosol | 28.36 | 33.33 |
| CDY09318 | Canola | cytosol | 28.36 | 33.33 |
| CDY21311 | Canola | cytosol | 28.36 | 33.33 |
| KRH43767 | Soybean | nucleus | 30.18 | 32.81 |
| Zm00001d033419_P001 | Maize | plastid | 32.36 | 31.79 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 36.73 | 31.46 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 34.55 | 30.74 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 33.82 | 30.69 |
| Bra035092.1-P | Field mustard | nucleus | 34.55 | 30.06 |
| CDX87407 | Canola | nucleus | 34.55 | 30.06 |
| CDX88507 | Canola | nucleus | 32.36 | 29.87 |
| AT4G19700.1 | Thale cress | cytosol | 32.73 | 29.61 |
| KRH11729 | Soybean | nucleus | 33.45 | 29.39 |
| PGSC0003DMT400062617 | Potato | nucleus | 32.0 | 29.33 |
| AT5G45100.1 | Thale cress | cytosol | 31.27 | 29.25 |
| Solyc02g031710.2.1 | Tomato | nucleus | 32.73 | 29.03 |
| KRH36722 | Soybean | nucleus | 32.73 | 29.03 |
| CDY71192 | Canola | cytosol | 29.45 | 28.93 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 33.45 | 28.75 |
| Bra013423.1-P | Field mustard | nucleus | 30.91 | 28.72 |
| KRG89416 | Soybean | nucleus | 32.73 | 28.66 |
| CDY51918 | Canola | cytosol | 29.82 | 28.57 |
| CDY01615 | Canola | cytosol | 31.64 | 28.52 |
| CDY71607 | Canola | cytosol | 31.64 | 28.43 |
| Bra012532.1-P | Field mustard | nucleus | 31.64 | 28.43 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 30.55 | 28.38 |
| CDY26402 | Canola | cytosol | 30.55 | 28.38 |
| CDY13070 | Canola | cytosol | 28.73 | 28.32 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 28.73 | 28.32 |
| CDY46345 | Canola | cytosol | 28.36 | 27.66 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 28.0 | 27.3 |
| CDY18062 | Canola | cytosol | 28.0 | 27.3 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 32.0 | 27.24 |
| KRH13682 | Soybean | nucleus | 32.73 | 26.71 |
| CDX79294 | Canola | nucleus | 29.45 | 26.64 |
| AT3G12920.1 | Thale cress | nucleus | 32.36 | 26.57 |
| CDY24237 | Canola | nucleus | 30.91 | 26.23 |
| Bra039354.1-P | Field mustard | cytosol | 30.91 | 26.15 |
| CDY43390 | Canola | cytosol | 30.91 | 26.15 |
| Bra034718.1-P | Field mustard | nucleus | 32.0 | 26.11 |
| Bra001477.1-P | Field mustard | nucleus | 31.64 | 25.59 |
| CDY64561 | Canola | nucleus | 31.64 | 25.59 |
| TraesCS2B01G306500.1 | Wheat | cytosol | 29.82 | 25.31 |
| CDX82568 | Canola | nucleus | 31.27 | 25.29 |
| AT1G79110.1 | Thale cress | nucleus | 32.73 | 25.14 |
| TraesCS2B01G306600.1 | Wheat | cytosol | 29.09 | 24.77 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 27.27 | 23.01 |
| Solyc02g069180.2.1 | Tomato | plastid | 23.64 | 22.97 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 24.73 | 20.12 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 21.82 | 17.19 |
| CDY23552 | Canola | cytosol | 12.73 | 16.13 |
| TraesCS4B01G215100.1 | Wheat | plastid | 18.55 | 15.04 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G484600.1 | EnsemblPlantsGene:TraesCS3B01G484600 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF12 | PFscan:PS50089 | PIRSF:PIRSF036836 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:731094860..731095764
Molecular Weight (calculated)
29130.7 Da
IEP (calculated)
7.377
GRAVY (calculated)
-0.231
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLTTGGGHH QHANRPGASA AAMPATASGP CYGAADQYSE LLALPAVDLA RKGGGAQEMT TGNKRRRVDE RSSVLGDVLA AHAQQQTVAV DHILHSCPAR
101: KMWAALAEQR RSHLRLIVST VEARAAKRLK AKDDEIERVR AMNWALEERL RNIYMEAQMW RDAAKSHEAA ANVLRADLQR VLDAQAVRGG GGCHGQDDAE
201: SCCWGENEVP ICAEEEVGTP APTGVGRCKA CGDGEAVVLL LPCRHLCVCA PCAAAAQACP SCGCAKNGSV CVNFS
101: KMWAALAEQR RSHLRLIVST VEARAAKRLK AKDDEIERVR AMNWALEERL RNIYMEAQMW RDAAKSHEAA ANVLRADLQR VLDAQAVRGG GGCHGQDDAE
201: SCCWGENEVP ICAEEEVGTP APTGVGRCKA CGDGEAVVLL LPCRHLCVCA PCAAAAQACP SCGCAKNGSV CVNFS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.