Factsheet for TraesCS6B01G118100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	93.7	93.16
TraesCSU01G113400.1	Wheat	nucleus	91.69	91.17
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	93.12	88.08
Os02t0130300-02	Rice	cytosol, nucleus, plastid	61.89	62.97
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	61.6	58.9
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	54.15	53.09
CDY34127	Canola	extracellular	7.45	43.33
KRH74575	Soybean	cytosol	38.97	40.36
KRH69583	Soybean	nucleus	38.97	40.36
PGSC0003DMT400035059	Potato	nucleus	37.25	39.16
Solyc05g005210.2.1	Tomato	nucleus	36.1	37.72
Bra019910.1-P	Field mustard	nucleus, plastid	32.66	37.5
VIT_01s0127g00360.t01	Wine grape	nucleus	36.96	36.54
CDX93396	Canola	cytosol	34.38	35.71
CDY24542	Canola	nucleus	32.95	35.17
Bra031495.1-P	Field mustard	nucleus	32.95	35.17
AT1G10650.1	Thale cress	nucleus	34.1	35.1
CDY37958	Canola	cytosol, plastid	34.1	35.1
CDY20611	Canola	nucleus	33.81	34.6
CDY20963	Canola	nucleus	33.24	34.32
Bra018428.1-P	Field mustard	nucleus	33.24	34.32
AT1G60610.4	Thale cress	nucleus	33.24	34.12
TraesCS4B01G215100.1	Wheat	plastid	26.36	27.14
TraesCS6B01G289500.1	Wheat	nucleus	22.06	22.78
TraesCS2B01G306600.1	Wheat	cytosol	20.34	21.98
TraesCS3B01G484600.1	Wheat	cytosol	17.19	21.82
TraesCS2B01G306500.1	Wheat	cytosol	19.48	20.99
TraesCS1B01G228800.1	Wheat	cytosol	18.62	19.94
TraesCS6B01G149100.1	Wheat	nucleus	14.61	19.39
TraesCS4B01G019600.1	Wheat	mitochondrion	16.91	19.03
TraesCS7B01G340600.1	Wheat	mitochondrion	16.62	18.59
TraesCS7B01G340700.1	Wheat	mitochondrion	16.33	18.27
TraesCS7B01G340500.1	Wheat	mitochondrion	16.33	18.1

Protein Annotations

EnsemblPlants:TraesCS6B01G118100.1	EnsemblPlantsGene:TraesCS6B01G118100	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF9	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6B:-:112905559..112909575

Molecular Weight (calculated)

37896.8 Da

IEP (calculated)

7.242

GRAVY (calculated)

-0.497

Length

349 amino acids

Sequence
(BLAST)

001: MEGQMFGGGK WGSSPYPGSN ANINANENQF LLDAKAAPQQ LQLFGSNSVG TSGYYNYNGN DNPYVMNQPR KTSNCTADEK KLKLQMSLNN FHAGDADRLA
101: CTGNSSVVST GLKLSYEDNE RNSSFTSGSG SMSSLTSTTP FGHDIMTEME KGNKEIDYYL RSQVEQLSRR VKEMKQRQMV SLVATLERGV GKKLKEKELE
201: VEAMNRKSQE LNEQIRQVAM QVQSWQSAAL YNESVASTLK SQLMKVVADH ANRTREGCGD SEVESGAVPI QKNINAVPGG FFESSLLPGV KSGVAGSGLA
301: ACRWCGAKEA AVLVMPCRHL CLCADCDRVA DACPVCQYPK SGSVEINMS

Best Arabidopsis Sequence Match ( AT1G60610.3 )
(BLAST)

001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF

Arabidopsis Description

At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.