Factsheet for TraesCS6A01G084400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	93.16	93.7
TraesCSU01G113400.1	Wheat	nucleus	91.17	91.17
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	91.17	86.72
Os02t0130300-02	Rice	cytosol, nucleus, plastid	60.11	61.52
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	60.68	58.36
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	53.28	52.53
CDY34127	Canola	extracellular	7.98	46.67
PGSC0003DMT400035059	Potato	nucleus	37.32	39.46
KRH74575	Soybean	cytosol	37.61	39.17
KRH69583	Soybean	nucleus	37.61	39.17
Solyc05g005210.2.1	Tomato	nucleus	36.47	38.32
Bra019910.1-P	Field mustard	nucleus, plastid	31.62	36.51
VIT_01s0127g00360.t01	Wine grape	nucleus	36.47	36.26
AT1G10650.1	Thale cress	nucleus	34.47	35.69
CDY24542	Canola	nucleus	33.05	35.47
Bra031495.1-P	Field mustard	nucleus	33.05	35.47
CDY20611	Canola	nucleus	34.19	35.19
CDY20963	Canola	nucleus	33.62	34.91
Bra018428.1-P	Field mustard	nucleus	33.62	34.91
CDX93396	Canola	cytosol	33.33	34.82
AT1G60610.4	Thale cress	nucleus	33.33	34.41
CDY37958	Canola	cytosol, plastid	33.05	34.22
TraesCS4A01G089200.1	Wheat	plastid	25.36	26.25
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	16.52	24.27
TraesCS2A01G290100.1	Wheat	cytosol	20.8	22.6
TraesCS6A01G262200.1	Wheat	nucleus	21.65	22.35
TraesCS2A01G290000.1	Wheat	cytosol	20.23	21.91
TraesCS3A01G448500.1	Wheat	mitochondrion	17.09	20.48
TraesCS1A01G215300.1	Wheat	cytosol	18.52	20.06
TraesCS6A01G120700.1	Wheat	nucleus	14.53	19.39
TraesCS4A01G293700.1	Wheat	mitochondrion	16.81	19.16
TraesCS7A01G442300.1	Wheat	mitochondrion	17.09	18.93
TraesCS7A01G442100.1	Wheat	mitochondrion	16.81	18.79
TraesCS7A01G441900.1	Wheat	mitochondrion	16.24	18.04

Protein Annotations

EnsemblPlants:TraesCS6A01G084400.1	EnsemblPlantsGene:TraesCS6A01G084400	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF9	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6A:+:53072456..53075379

Molecular Weight (calculated)

37898.8 Da

IEP (calculated)

7.622

GRAVY (calculated)

-0.441

Length

351 amino acids

Sequence
(BLAST)

001: MEGHVFGGGN WGSSPYPGPN ANINASVNEN QFMFDAKAAP QQLQLFGSNA VGTSGYYNYN GNGNPYVMNQ PRKTSNCAAD EKKLKLQMSL NNFHAGDADR
101: LACTGNSSVV STGLKLSYED NEHNSSFTSG SGSMSSLTST TPFGHDIMTE MEKGNKEIDY YLRSQVEQLS RRVKEMKQRQ MVSLVSTLER GVGKKLREKE
201: LEVEAMNKKS QELNEQIRQV AIQVQSWQSA ALYNESVAST LKTQLMKVVA DHANLTREGC GDSVVESGAV PGQKNINTVP GGFFKSSLLP GVKSGVAGSG
301: LAACKWCGAK EAAVLVMPCR HLCLCADCDR VTDACPVCQY PKSGSVEINM S

Best Arabidopsis Sequence Match ( AT1G60610.3 )
(BLAST)

001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF

Arabidopsis Description

At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.