CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019910.1-P	Field mustard	nucleus, plastid	88.39	97.7
CDY37958	Canola	cytosol, plastid	96.13	95.28
CDY20611	Canola	nucleus	83.33	82.11
AT1G10650.1	Thale cress	nucleus	81.55	80.83
CDY20963	Canola	nucleus	80.95	80.47
CDY34127	Canola	extracellular	13.39	75.0
CDY24542	Canola	nucleus	63.69	65.44
KRH69583	Soybean	nucleus	54.46	54.3
KRH74575	Soybean	cytosol	53.87	53.71
PGSC0003DMT400035059	Potato	nucleus	51.79	52.41
VIT_01s0127g00360.t01	Wine grape	nucleus	53.87	51.27
Solyc05g005210.2.1	Tomato	nucleus	50.3	50.6
TraesCSU01G113400.1	Wheat	nucleus	36.61	35.04
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	35.71	34.38
CDY17103	Canola	cytosol	29.76	33.78
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	36.61	33.33
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	34.82	33.33
Os02t0130300-02	Rice	cytosol, nucleus, plastid	33.93	33.24
CDY06767	Canola	cytosol	29.76	32.89
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	34.82	32.87
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	35.42	32.6
CDY40841	Canola	cytosol	27.98	31.44
CDY33511	Canola	nucleus	27.98	31.02
CDX77733	Canola	nucleus	27.68	31.0
CDY17048	Canola	cytosol	28.57	30.87
CDY43447	Canola	nucleus	27.08	30.13
CDY37172	Canola	cytosol	26.49	29.47
CDY51856	Canola	cytosol	26.19	29.04
CDY09609	Canola	cytosol	21.13	28.74
CDY03162	Canola	cytosol	27.08	28.26
CDY21311	Canola	cytosol	18.75	26.92
CDX94520	Canola	cytosol	18.75	26.92
CDY07541	Canola	cytosol	18.75	26.92
CDY09318	Canola	cytosol	18.75	26.92
CDX90458	Canola	cytosol	23.81	26.32
CDY51918	Canola	cytosol	20.83	24.39
CDY24237	Canola	nucleus	22.92	23.77
CDY26402	Canola	cytosol	20.83	23.65
CDY71607	Canola	cytosol	21.43	23.53
CDY52651	Canola	cytosol	15.48	23.53
CDY43390	Canola	cytosol	22.62	23.38
CDY01615	Canola	cytosol	21.13	23.28
CDX69109	Canola	nucleus	13.99	22.93
CDX88507	Canola	nucleus	20.24	22.82
CDX79294	Canola	nucleus	20.54	22.7
CDY64561	Canola	nucleus	22.92	22.65
CDX87407	Canola	nucleus	21.13	22.47
CDX82568	Canola	nucleus	22.32	22.06
CDX72513	Canola	cytosol	15.18	21.79
CDY71192	Canola	cytosol	18.15	21.79
CDY40647	Canola	cytosol	15.18	21.7
CDY13070	Canola	cytosol	17.86	21.51
CDY15019	Canola	cytosol	15.77	21.12
CDX73168	Canola	cytosol	15.77	21.12
CDX76311	Canola	cytosol	15.77	20.95
CDY46345	Canola	cytosol	17.26	20.57
CDY18062	Canola	cytosol	17.26	20.57
CDY17506	Canola	cytosol, nucleus, plastid	15.48	20.55
CDY23552	Canola	cytosol	10.42	16.13

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DVT3
EnsemblPlants:CDX93396	ProteinID:CDX93396	ProteinID:CDX93396.1	ncoils:Coil	InterPro:E3ligase_BOI_like	EnsemblPlantsGene:GSBRNA2T00156055001
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR42647
PANTHER:PTHR42647:SF8	UniPathway:UPA00144	UniParc:UPI0004EDDA83	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA06g06520D

Coordinates

chrLK031876:+:24144..26302

Molecular Weight (calculated)

37807.8 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.686

Length

336 amino acids

Sequence
(BLAST)

001: MLSGNNGNTA PQVFMNENQL QYHTNTQSNQ LHLLGTMGGG GCTTINPVNY FANDNLVPMV RPNKRGREAE SISNNNNIQR QHQLQMSLNY NHSVQEEALK
101: ENLVSTGLRL SYDDEERNSS VTSASGSIVA ASPFSQSLDD TLRIHLHRQK HELDQFLKIQ AAQMAKGVRD IKQRQIASLL STIEQGVSRK LQEKDQEIEI
201: MNRKNKELVE RIKQVTTEAQ NWHHRAKYNE SVVIALKSNL QQAMSHNNNN KKVTADQGKE GFGDSEIDDA ASSYIDPNNK KMGNQRMRCR MCNAKEVSVL
301: LVPCRHLSLC KECDVFTSVC PVCKSLKTSS VQVFFS

Best Arabidopsis Sequence Match ( AT1G10650.1 )
(BLAST)

001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.