Factsheet for VIT_01s0127g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69583	Soybean	nucleus	64.59	67.66
KRH74575	Soybean	cytosol	64.59	67.66
VIT_17s0000g08570.t01	Wine grape	nucleus	58.07	61.38
PGSC0003DMT400035059	Potato	nucleus	57.22	60.84
Solyc05g005210.2.1	Tomato	nucleus	56.66	59.88
AT1G10650.1	Thale cress	nucleus	54.67	56.93
Bra019910.1-P	Field mustard	nucleus, plastid	47.31	54.93
Bra031495.1-P	Field mustard	nucleus	50.42	54.43
CDY24542	Canola	nucleus	50.42	54.43
CDX93396	Canola	cytosol	51.27	53.87
Bra018428.1-P	Field mustard	nucleus	51.56	53.85
CDY20963	Canola	nucleus	51.56	53.85
AT1G60610.4	Thale cress	nucleus	51.56	53.53
CDY20611	Canola	nucleus	51.56	53.37
CDY37958	Canola	cytosol, plastid	50.99	53.1
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	39.94	38.63
TraesCSU01G113400.1	Wheat	nucleus	38.24	38.46
Os02t0130300-02	Rice	cytosol, nucleus, plastid	36.54	37.61
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	36.54	36.96
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	36.26	36.47
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	36.54	36.24
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	36.83	35.23
VIT_18s0001g10370.t01	Wine grape	nucleus	26.91	28.96
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	26.91	28.19
VIT_19s0027g00740.t01	Wine grape	nucleus	22.95	26.21
VIT_03s0038g02450.t01	Wine grape	nucleus	15.86	25.93
VIT_18s0001g14740.t01	Wine grape	cytosol	20.68	25.52
VIT_10s0042g01070.t01	Wine grape	nucleus	20.68	24.09

Protein Annotations

EntrezGene:100248199	wikigene:100248199	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM474052	ProteinID:CAN63942
ProteinID:CAN63942.1	ProteinID:CCB51797	ProteinID:CCB51797.1	ncoils:Coil	InterPro:E3ligase_BOI_like	UniProt:F6HHW0
EMBL:FN595761	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100248199	wikigene:LOC100248199	PFAM:PF13920
PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR42647	PANTHER:PTHR42647:SF8	UniParc:UPI00015CCBF3	ArrayExpress:VIT_01s0127g00360
EnsemblPlantsGene:VIT_01s0127g00360	EnsemblPlants:VIT_01s0127g00360.t01	unigene:Vvi.12044	unigene:Vvi.15824	RefSeq:XP_002267125	RefSeq:XP_002267125.2
RefSeq:XP_010651528.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

No Description!

Coordinates

chr1:+:7708078..7712870

Molecular Weight (calculated)

39543.9 Da

IEP (calculated)

7.065

GRAVY (calculated)

-0.613

Length

353 amino acids

Sequence
(BLAST)

001: MLGGSNSNHM LPVFLGESGF QCHTNASNQL QLFGNLPAGC GVDPVNYFGN ELNTSMLQPN KRGREAEDFT RRQKLHISLN EAEEISRRQK HQISFKYNIS
101: QDEADRSASF LNQNPVSTGL KLSYDDDEHN SSVTSSGSMT AAPSIILSLG DSIGAELDRQ KEEFDQYIKI QEEHLVKGVR NMRQRHMTSF LAPIEKVVRK
201: KLREKDLELE NMNRKNRELV ERIKQAAVEA QNWHYKAKYN ESVVNLLKNN LQHAISQGAD QGKEGFGDSE VDDAASYIDP HNMVIPGGPG RANSQNKEGL
301: KEQMICRACK SKEVSILLIP CRHLCICKEC EGLISVCPVC QSMKTTGVQV YLS

Best Arabidopsis Sequence Match ( AT1G10650.1 )
(BLAST)

001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.