Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g02450.t01 | Wine grape | nucleus | 33.57 | 44.44 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 24.83 | 23.43 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 26.22 | 22.26 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 23.78 | 22.01 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 25.52 | 20.68 |
| VIT_17s0000g08570.t01 | Wine grape | nucleus | 23.78 | 20.36 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 21.33 | 18.6 |
Protein Annotations
| EntrezGene:100252373 | wikigene:100252373 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AM443219 | ProteinID:CAN63052 |
| ProteinID:CAN63052.1 | ProteinID:CCB46060 | ProteinID:CCB46060.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | UniProt:F6GZS3 |
| EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0022900 | GO:GO:0045454 |
| GO:GO:0055114 | InterPro:IPR013083 | EntrezGene:LOC100252373 | wikigene:LOC100252373 | PIRSF:PIRSF036836 | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF4 | UniParc:UPI0001985105 | ArrayExpress:VIT_18s0001g14740 | EnsemblPlantsGene:VIT_18s0001g14740 | EnsemblPlants:VIT_18s0001g14740.t01 | RefSeq:XP_002279403 |
| RefSeq:XP_002279403.1 | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:+:12783608..12784580
Molecular Weight (calculated)
32678.8 Da
IEP (calculated)
5.264
GRAVY (calculated)
-0.595
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDAQYYSE SMGLAMCGVQ DWWVNPVSSS GLDVDASNFN PQQLPQVHHL HNHYSIQDLC VDDNTSPNPF PSSSSSDKLL PMAFSQSLAD QLETQRLEID
101: WLLHFQLERL KFALQEQRKQ QLGSLLNRLE SKTITLMRQK EEDLARATKK MMELEDWLRR REVESQGWQR VATENEAMVK YLNNMLEQVR ETHLLLSNGA
201: EDAESYGGGP IDRREDEGRG RDRGEGGEEV KDQCKKMACK RCNSRTSCFL FFPCRHLCSC KSCEPLLGCC PVCKSVKEAS MEVFLV
101: WLLHFQLERL KFALQEQRKQ QLGSLLNRLE SKTITLMRQK EEDLARATKK MMELEDWLRR REVESQGWQR VATENEAMVK YLNNMLEQVR ETHLLLSNGA
201: EDAESYGGGP IDRREDEGRG RDRGEGGEEV KDQCKKMACK RCNSRTSCFL FFPCRHLCSC KSCEPLLGCC PVCKSVKEAS MEVFLV
001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
Arabidopsis Description
At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.