Factsheet for VIT_03s0038g02450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015829	Potato	nucleus	51.39	44.05
CDX69109	Canola	nucleus	40.74	42.93
Solyc10g055560.1.1	Tomato	nucleus	52.31	41.85
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	50.93	41.67
Solyc01g111610.2.1	Tomato	cytosol	46.3	41.15
KRH60696	Soybean	nucleus, plastid	54.63	40.41
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	41.2	40.27
KRH51394	Soybean	nucleus	53.24	40.07
CDY52651	Canola	cytosol	40.74	39.82
CDY40647	Canola	cytosol	43.06	39.57
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	42.59	39.15
CDX72513	Canola	cytosol	41.67	38.46
AT4G35070.1	Thale cress	cytosol	45.37	36.98
CDY15019	Canola	cytosol	42.59	36.65
CDX73168	Canola	cytosol	42.59	36.65
Bra034672.1-P	Field mustard	cytosol	42.59	36.65
CDX76311	Canola	cytosol	42.59	36.36
CDY17506	Canola	cytosol, nucleus, plastid	42.13	35.97
VIT_18s0001g14740.t01	Wine grape	cytosol	44.44	33.57
KRG94235	Soybean	cytosol	36.57	31.85
KRH24321	Soybean	cytosol	42.13	31.6
KRH29000	Soybean	cytosol	41.67	31.36
VIT_10s0042g01070.t01	Wine grape	nucleus	31.02	22.11
VIT_19s0027g00740.t01	Wine grape	nucleus	29.17	20.39
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	30.56	19.58
VIT_17s0000g08570.t01	Wine grape	nucleus	27.31	17.66
VIT_18s0001g10370.t01	Wine grape	nucleus	26.39	17.38
VIT_01s0127g00360.t01	Wine grape	nucleus	25.93	15.86

Protein Annotations

EntrezGene:100262284	wikigene:100262284	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CBI37868	ProteinID:CBI37868.3
ncoils:Coil	UniProt:D7U549	InterPro:E3ligase_BOI_like	EMBL:FN596508	InterPro:IPR013083	EntrezGene:LOC100262284
wikigene:LOC100262284	PFAM:PF13920	PIRSF:PIRSF036836	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	UniParc:UPI0001BE51D4
ArrayExpress:VIT_03s0038g02450	EnsemblPlantsGene:VIT_03s0038g02450	EnsemblPlants:VIT_03s0038g02450.t01	unigene:Vvi.15999	RefSeq:XP_002277843	RefSeq:XP_002277843.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:1707800..1708798

Molecular Weight (calculated)

24560.0 Da

IEP (calculated)

5.449

GRAVY (calculated)

-0.777

Length

216 amino acids

Sequence
(BLAST)

001: MGSTLKNSPN YGSSHSLASQ FDNQRQEIDQ FITLQSERLR LVLQEQRKQQ LAALMRKVES KALALLRQKD EEIAKATNRA MELEDFLRKL EMENQAWQRV
101: AKENEAKVMS LNHTIEQIKE KACGIFSEDA ESCCDDNMGN REEGTGENRR GGGGEGEEHE EDSTSNMVCR GCNSRNSCVL LLPCRHFCSC KACEGFFDHC
201: PVCQTEKKGW IEARIF

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.