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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plastid 1
  • mitochondrion 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:extracellular
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY40647 Canola cytosol 99.57 99.57
Bra034672.1-P Field mustard cytosol 80.85 75.7
Bra011582.1-P Field mustard cytosol, nucleus, plastid 68.09 72.4
AT4G35070.1 Thale cress cytosol 75.74 67.17
VIT_03s0038g02450.t01 Wine grape nucleus 39.15 42.59
Solyc01g111610.2.1 Tomato cytosol 40.43 39.09
PGSC0003DMT400015829 Potato nucleus 41.7 38.89
PGSC0003DMT400068728 Potato mitochondrion, nucleus 42.98 38.26
Solyc10g055560.1.1 Tomato nucleus 42.98 37.41
KRH51394 Soybean nucleus 39.57 32.4
KRH60696 Soybean nucleus, plastid 37.02 29.79
KRH24321 Soybean cytosol 34.89 28.47
KRH29000 Soybean cytosol 34.04 27.87
KRG94235 Soybean cytosol 29.36 27.82
Bra040255.1-P Field mustard nucleus 22.98 23.58
Bra024967.1-P Field mustard plastid 23.4 22.27
Bra039533.1-P Field mustard cytosol, nucleus, plastid 24.68 19.59
Bra017511.1-P Field mustard nucleus 25.11 19.54
Bra035092.1-P Field mustard nucleus 25.96 19.3
Bra013423.1-P Field mustard nucleus 23.4 18.58
Bra014051.1-P Field mustard nucleus 24.26 18.33
Bra039354.1-P Field mustard cytosol 25.11 18.15
Bra028364.1-P Field mustard cytosol, nucleus, plastid 21.7 18.09
Bra034718.1-P Field mustard nucleus 25.53 17.8
Bra012532.1-P Field mustard nucleus 22.98 17.65
Bra027588.1-P Field mustard cytosol, nucleus, plastid 20.85 17.56
Bra001477.1-P Field mustard nucleus 24.68 17.06
Bra022093.1-P Field mustard nucleus 14.47 15.45
Bra012650.1-P Field mustard nucleus 22.55 15.19
Bra031495.1-P Field mustard nucleus 20.0 14.37
Bra018428.1-P Field mustard nucleus 20.0 13.91
Bra019910.1-P Field mustard nucleus, plastid 17.87 13.82
Protein Annotations
EnsemblPlants:Bra017691.1EnsemblPlants:Bra017691.1-PEnsemblPlantsGene:Bra017691Gene3D:3.30.40.10InterPro:E3ligase_BOI_likeInterPro:IPR013083
InterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR42647PANTHER:PTHR42647:SF6PIRSF:PIRSF036836UniParc:UPI0002540B46
UniProt:M4DMF8MapMan:35.1::::
Description
AT4G35070 (E=3e-027) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding (TAIR:AT1G45976.1); Has 762 Blast hits to 716 proteins in 103 species: Archae - 2; Bacteria - 18; Metazoa - 250; Fungi - 8; Plants - 213; Viruses - 21; Other Eukaryotes - 250 (source: NCBI BLink).
Coordinates
chrA03:+:29800010..29800800
Molecular Weight (calculated)
26634.8 Da
IEP (calculated)
5.808
GRAVY (calculated)
-0.519
Length
235 amino acids
Sequence
(BLAST)
001: MAIQAQLSYN APFIGTGGSE LSLINNDGGI GINQSYMNNQ QALFHTQQNR SQSFFDAHME KQRREIDQFI RVQSERLRYA LQEQRKQETE TILRKMEAKA
101: LVLMAQKEEG MSRALSKNME LENLLRKMET ENQTWQRVAR ENEAMVATLN STLEQVRERA ATCRNDVTAA EDEGSFCGDN FPMSSCCLNC GLNGETRVLF
201: LPCRHLCCCT GCEDGLVLCP ICNTPKKNRI EASVF
Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)
001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
Arabidopsis Description
At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.