Factsheet for Bra027588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13070	Canola	cytosol	99.64	99.64
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	85.66	84.75
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	66.67	62.84
AT5G45100.1	Thale cress	cytosol	65.23	61.9
Bra012532.1-P	Field mustard	nucleus	58.78	53.59
Bra013423.1-P	Field mustard	nucleus	55.91	52.7
KRH36722	Soybean	nucleus	42.29	38.06
KRH11729	Soybean	nucleus	42.65	38.02
GSMUA_Achr4P23050_001	Banana	nucleus	25.09	37.23
PGSC0003DMT400062617	Potato	nucleus	39.78	37.0
VIT_10s0042g01070.t01	Wine grape	nucleus	40.14	36.96
Solyc02g031710.2.1	Tomato	nucleus	40.5	36.45
GSMUA_Achr7P00850_001	Banana	plastid	29.75	36.09
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	41.58	35.91
GSMUA_Achr2P13160_001	Banana	plastid	31.54	35.63
GSMUA_Achr5P02100_001	Banana	plastid	30.82	35.25
KRG89416	Soybean	nucleus	38.71	34.39
KRH50476	Soybean	cytosol, nucleus, plastid	39.07	34.06
GSMUA_Achr4P28300_001	Banana	nucleus	29.03	33.61
Bra035092.1-P	Field mustard	nucleus	36.56	32.28
GSMUA_Achr4P32070_001	Banana	nucleus	32.97	32.17
Solyc02g069180.2.1	Tomato	plastid	30.11	29.68
TraesCS3B01G484600.1	Wheat	cytosol	28.32	28.73
GSMUA_Achr6P31690_001	Banana	nucleus	29.75	27.85
GSMUA_Achr9P09830_001	Banana	nucleus	31.9	27.73
TraesCS3D01G441300.1	Wheat	mitochondrion	28.32	27.24
Bra001477.1-P	Field mustard	nucleus	32.97	27.06
TraesCS3A01G448500.1	Wheat	mitochondrion	28.32	26.96
TraesCS3D01G441000.1	Wheat	mitochondrion	27.96	26.9
TraesCS7D01G431300.1	Wheat	mitochondrion	30.11	26.84
Bra034718.1-P	Field mustard	nucleus	32.26	26.71
Bra039354.1-P	Field mustard	cytosol	30.82	26.46
HORVU4Hr1G003180.3	Barley	mitochondrion	29.03	26.38
TraesCS4B01G019600.1	Wheat	mitochondrion	29.03	26.13
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	28.32	26.07
TraesCS7B01G340700.1	Wheat	mitochondrion	29.03	25.96
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	22.22	25.94
TraesCS7A01G442300.1	Wheat	mitochondrion	29.39	25.87
TraesCS7A01G442100.1	Wheat	mitochondrion	29.03	25.8
TraesCS7A01G441900.1	Wheat	mitochondrion	29.03	25.63
TraesCS7B01G340500.1	Wheat	mitochondrion	28.67	25.4
HORVU6Hr1G021960.1	Barley	plastid	23.66	25.29
HORVU6Hr1G021880.1	Barley	plastid	23.66	25.29
HORVU7Hr1G100540.2	Barley	mitochondrion	27.24	25.0
EER91098	Sorghum	nucleus	31.54	24.79
TraesCS6D01G110700.1	Wheat	nucleus	23.3	24.71
TraesCS7B01G340600.1	Wheat	mitochondrion	27.6	24.68
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	26.88	24.43
TraesCS4A01G293700.1	Wheat	mitochondrion	26.88	24.35
TraesCS7D01G431200.1	Wheat	mitochondrion	26.88	24.35
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	28.67	24.24
TraesCS6B01G149100.1	Wheat	nucleus	22.58	23.95
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	18.64	23.53
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	26.16	23.25
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	22.58	23.25
TraesCS6A01G120700.1	Wheat	nucleus	21.51	22.81
Bra024967.1-P	Field mustard	plastid	19.35	21.86
Bra040255.1-P	Field mustard	nucleus	17.92	21.83
Bra034672.1-P	Field mustard	cytosol	19.35	21.51
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	17.56	20.85
Zm00001d033419_P001	Maize	plastid	20.07	20.0
Bra031495.1-P	Field mustard	nucleus	22.58	19.27
Bra017511.1-P	Field mustard	nucleus	19.71	18.21
Bra019910.1-P	Field mustard	nucleus, plastid	19.71	18.09
Bra018428.1-P	Field mustard	nucleus	21.51	17.75
Bra014051.1-P	Field mustard	nucleus	18.64	16.72
Bra012650.1-P	Field mustard	nucleus	18.28	14.61
Bra022093.1-P	Field mustard	nucleus	8.24	10.45

Protein Annotations

EnsemblPlants:Bra027588.1	EnsemblPlants:Bra027588.1-P	EnsemblPlantsGene:Bra027588	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SUPFAM:SSF57850	UniParc:UPI00025426E4	UniProt:M4EFM6	MapMan:35.1

Description

AT5G45100 (E=3e-088) | protein binding / zinc ion binding

Coordinates

chrA09:-:13097590..13098429

Molecular Weight (calculated)

30884.0 Da

IEP (calculated)

6.497

GRAVY (calculated)

-0.208

Length

279 amino acids

Sequence
(BLAST)

001: MNNQIIADDF PVTLGDRQLQ YMQSRAIDLI QTAPSFNKYH FNQSPVMLKR QRDYAFDSEA LMTARKRRSV AFVPPQSLIE AQLVSQIQQQ QTDIDLFVAQ
101: QTQTLRLELE ARQRTQTLSL VSAVQSVIVK KLKQRDDEIV RMGKLNYVLQ ERVKSLYVEN QILRDLAHTN EATAKTLRSN LEHVLAQVDD LPATAATGGD
201: VFHPPVEEDA VSSCGSCDGA DGNDFTAGTG GCKRCGERTA SVLVLPCRHL CLCTVCGSAL LQACPVCDTV MNASVHVNM

Best Arabidopsis Sequence Match ( AT5G45100.1 )
(BLAST)

001: MAVEARHMNL FSSQYITNRE CVKSQTNMNN GQQIAGGGFP VTIGDRNLQY IDPINSFNKS ESELTAISKR QRDSTFDSDA LIASQKRRAI AFSPASLIDA
101: ELVSQIQQQN SEIDRFVAQQ TETLRIELEA RQRTQTRMLA SAVQNAILKK LKAKDEEIIR MGKLNWVLQE RVKNLYVENQ IWRDLAQTNE ATANNLRSNL
201: EQVLAQVDDL DAFRRPLVEE ADDAESSCGS CDGGDVTAVV NGGCKRCGEL TASVLVLPCR HLCLCTVCGS SALLRTCPVC DMVMTASVHV NMSS

Arabidopsis Description

BRG1BOI-related E3 ubiquitin-protein ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.