CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRG91274
KRG93828
KRH01494
KRH01744
KRH02746
KRH08093
KRH18264
KRH19120
KRH28787
KRH35533
KRH36141
KRH44140
KRH46935
KRH47114
KRH69796
KRH76667

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	KRH02746	AT2G24570.1	21798944
AT4G19700.1	KRH19120	AT2G24570.1	21798944
AT4G19700.1	KRH01744	AT2G43370.1	21798944
AT4G19700.1	KRH46935	AT2G43370.1	21798944
AT4G19700.1	KRH44140	AT3G13860.1	21798944
AT4G19700.1	KRH47114	AT3G13860.1	21798944
AT4G19700.1	KRG91274	AT4G02770.1	21798944
AT4G19700.1	KRH35533	AT4G02770.1	21798944
AT4G19700.1	KRH02746	AT4G31550.1	21798944
AT4G19700.1	KRH19120	AT4G31550.1	21798944
AT4G19700.1	KRH08093	AT4G36110.1	21798944
AT4G19700.1	KRH28787	AT4G36110.1	21798944
AT4G19700.1	KRH69796	AT4G36110.1	21798944
AT4G19700.1	KRH76667	AT4G36110.1	21798944
AT4G19700.1	KRG90619	AT5G08330.1	21798944
AT4G19700.1	KRH36141	AT5G08330.1	21798944
AT4G19700.1	KRG93828	AT5G38640.1	21798944
AT4G19700.1	KRH01494	AT5G38640.1	21798944
AT4G19700.1	KRH18264	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50476	Soybean	cytosol, nucleus, plastid	87.9	86.25
KRH36722	Soybean	nucleus	56.37	57.1
KRH11729	Soybean	nucleus	56.69	56.87
VIT_10s0042g01070.t01	Wine grape	nucleus	49.04	50.83
AT5G45100.1	Thale cress	cytosol	44.59	47.62
CDX94520	Canola	cytosol	35.03	47.01
CDY07541	Canola	cytosol	35.03	47.01
CDY09318	Canola	cytosol	35.03	47.01
CDY21311	Canola	cytosol	35.03	47.01
PGSC0003DMT400062617	Potato	nucleus	44.59	46.67
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	47.13	45.82
Solyc02g031710.2.1	Tomato	nucleus	44.9	45.48
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	42.36	44.93
Bra013423.1-P	Field mustard	nucleus	42.36	44.93
CDY26402	Canola	cytosol	42.36	44.93
CDY01615	Canola	cytosol	43.63	44.92
Bra012532.1-P	Field mustard	nucleus	43.63	44.77
CDY71607	Canola	cytosol	43.31	44.44
KRH43767	Soybean	nucleus	35.67	44.27
GSMUA_Achr2P13160_001	Banana	plastid	34.71	44.13
CDY51918	Canola	cytosol	40.13	43.9
AT4G19700.1	Thale cress	cytosol	41.72	43.09
GSMUA_Achr4P32070_001	Banana	nucleus	38.53	42.31
Solyc02g069180.2.1	Tomato	plastid	37.9	42.05
GSMUA_Achr5P02100_001	Banana	plastid	32.48	41.8
GSMUA_Achr7P00850_001	Banana	plastid	29.94	40.87
GSMUA_Achr4P28300_001	Banana	nucleus	31.21	40.66
GSMUA_Achr4P23050_001	Banana	nucleus	24.2	40.43
CDY71192	Canola	cytosol	35.67	40.0
KRH13682	Soybean	nucleus	42.68	39.76
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	35.35	39.36
CDY13070	Canola	cytosol	34.71	39.07
CDY18062	Canola	cytosol	35.03	39.01
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	34.39	38.71
CDY46345	Canola	cytosol	34.71	38.65
GSMUA_Achr6P31690_001	Banana	nucleus	35.67	37.58
GSMUA_Achr9P09830_001	Banana	nucleus	35.99	35.2
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	25.16	33.05
TraesCS3D01G441000.1	Wheat	mitochondrion	30.25	32.76
TraesCS3D01G441300.1	Wheat	mitochondrion	30.25	32.76
TraesCS3B01G484600.1	Wheat	cytosol	28.66	32.73
TraesCS3A01G448500.1	Wheat	mitochondrion	30.25	32.42
HORVU4Hr1G003180.3	Barley	mitochondrion	31.53	32.25
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	30.89	32.01
TraesCS7D01G431300.1	Wheat	mitochondrion	31.53	31.63
TraesCS7B01G340600.1	Wheat	mitochondrion	30.57	30.77
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	26.43	30.63
TraesCS4A01G293700.1	Wheat	mitochondrion	29.94	30.52
TraesCS4B01G019600.1	Wheat	mitochondrion	29.94	30.32
TraesCS7A01G442300.1	Wheat	mitochondrion	30.57	30.28
TraesCS7B01G340500.1	Wheat	mitochondrion	30.25	30.16
TraesCS7B01G340700.1	Wheat	mitochondrion	29.94	30.13
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	29.3	29.97
TraesCS7A01G442100.1	Wheat	mitochondrion	29.94	29.94
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	31.21	29.7
EER91098	Sorghum	nucleus	33.44	29.58
HORVU7Hr1G100540.2	Barley	mitochondrion	28.34	29.28
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	28.66	28.66
TraesCS7A01G441900.1	Wheat	mitochondrion	28.66	28.48
TraesCS7D01G431200.1	Wheat	mitochondrion	27.71	28.25
HORVU6Hr1G021960.1	Barley	plastid	22.61	27.2
HORVU6Hr1G021880.1	Barley	plastid	22.61	27.2
TraesCS6D01G110700.1	Wheat	nucleus	22.29	26.62
TraesCS6A01G120700.1	Wheat	nucleus	21.97	26.24
TraesCS6B01G149100.1	Wheat	nucleus	21.66	25.86
KRH77271	Soybean	plastid	25.48	24.84
KRH51394	Soybean	nucleus	22.29	24.39
KRH69583	Soybean	nucleus	26.11	24.33
KRH60696	Soybean	nucleus, plastid	22.61	24.32
KRH28216	Soybean	nucleus	25.16	24.01
KRH57556	Soybean	nucleus	26.75	24.0
Zm00001d033419_P001	Maize	plastid	21.34	23.93
KRH04275	Soybean	nucleus	27.07	23.81
KRH74575	Soybean	cytosol	25.48	23.74
KRH24321	Soybean	cytosol	19.43	21.18
KRG94235	Soybean	cytosol	16.24	20.56
KRH29000	Soybean	cytosol	18.79	20.56
KRH15376	Soybean	nucleus, plastid	21.34	19.09
KRH05668	Soybean	nucleus	20.38	18.71

Protein Annotations

EMBL:ACUP02012206	EnsemblPlants:KRG89416	EnsemblPlantsGene:GLYMA_20G022400	EntrezGene:100791833	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFAM:PF13920
PFscan:PS50089	ProteinID:KRG89416	ProteinID:KRG89416.1	SEG:seg	UniParc:UPI0001BA83DD	UniProt:I1NDF8
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:2330282..2331936

Molecular Weight (calculated)

35259.9 Da

IEP (calculated)

7.119

GRAVY (calculated)

-0.534

Length

314 amino acids

Sequence
(BLAST)

001: MAVEAPPHNM NLFPSQLLTA REMMKPNLGF YTAQQTEAAA TPLLQSTALP FLHQSDSGLT CHVTTTAPTR KRSRDSITTV PNALLPLPQK NKLSSSSSSS
101: PPPSILDQEL LFHFQNQQSE IDRFIVQHTE KVRMEMAEQR VRQSRMLITA IQEAVAKKLK EKDEEIQRVG KLNWVLQERV KSICVENQIW KELAQTNEAT
201: ANNLRNNLEQ VLAHVSEDHH NHNHHAVEAA ESSCASNNNN NHHHHREEEE VCGGYERNDG VLGKRMCNQC GVRESIVLLL PCRHLCLCTM CGSTVHNCPL
301: CQSGINASVH VNYS

Best Arabidopsis Sequence Match ( AT5G45100.1 )
(BLAST)

001: MAVEARHMNL FSSQYITNRE CVKSQTNMNN GQQIAGGGFP VTIGDRNLQY IDPINSFNKS ESELTAISKR QRDSTFDSDA LIASQKRRAI AFSPASLIDA
101: ELVSQIQQQN SEIDRFVAQQ TETLRIELEA RQRTQTRMLA SAVQNAILKK LKAKDEEIIR MGKLNWVLQE RVKNLYVENQ IWRDLAQTNE ATANNLRSNL
201: EQVLAQVDDL DAFRRPLVEE ADDAESSCGS CDGGDVTAVV NGGCKRCGEL TASVLVLPCR HLCLCTVCGS SALLRTCPVC DMVMTASVHV NMSS

Arabidopsis Description

BRG1BOI-related E3 ubiquitin-protein ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.