CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29000	Soybean	cytosol	89.58	89.9
KRG94235	Soybean	cytosol	68.75	79.84
PGSC0003DMT400015829	Potato	nucleus	37.85	43.25
Solyc01g111610.2.1	Tomato	cytosol	36.46	43.21
VIT_03s0038g02450.t01	Wine grape	nucleus	31.6	42.13
KRH60696	Soybean	nucleus, plastid	39.93	39.38
KRH51394	Soybean	nucleus	39.24	39.37
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	35.42	38.64
CDX69109	Canola	nucleus	26.39	37.07
CDX72513	Canola	cytosol	29.86	36.75
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	28.12	36.65
Solyc10g055560.1.1	Tomato	nucleus	34.03	36.3
CDY52651	Canola	cytosol	27.78	36.2
CDY40647	Canola	cytosol	28.82	35.32
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	28.47	34.89
AT4G35070.1	Thale cress	cytosol	31.6	34.34
CDX73168	Canola	cytosol	28.82	33.07
CDY15019	Canola	cytosol	28.82	33.07
CDX76311	Canola	cytosol	28.82	32.81
Bra034672.1-P	Field mustard	cytosol	28.47	32.67
CDY17506	Canola	cytosol, nucleus, plastid	28.47	32.41
KRH77271	Soybean	plastid	25.35	22.67
KRH57556	Soybean	nucleus	27.43	22.57
KRH04275	Soybean	nucleus	27.78	22.41
KRH28216	Soybean	nucleus	25.0	21.88
KRH43767	Soybean	nucleus	19.1	21.74
KRH11729	Soybean	nucleus	23.61	21.73
KRH36722	Soybean	nucleus	22.92	21.29
KRH50476	Soybean	cytosol, nucleus, plastid	22.92	20.62
KRH74575	Soybean	cytosol	22.92	19.58
KRG89416	Soybean	nucleus	21.18	19.43
KRH69583	Soybean	nucleus	21.88	18.69
KRH13682	Soybean	nucleus	21.53	18.4
KRH15376	Soybean	nucleus, plastid	20.14	16.52
KRH05668	Soybean	nucleus	19.44	16.37

Protein Annotations

EMBL:ACUP02007174	EnsemblPlants:KRH24321	EnsemblPlantsGene:GLYMA_12G033400	EntrezGene:100813629	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like
InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	PFAM:PF13920
PIRSF:PIRSF036836	ProteinID:KRH24321	ProteinID:KRH24321.1	ProteinID:KRH24322.1	SEG:seg	SUPFAM:SSF57850
UniParc:UPI000233D5E6	UniProt:I1LPT4	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:2511854..2514061

Molecular Weight (calculated)

33024.4 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.649

Length

288 amino acids

Sequence
(BLAST)

001: MAIQAQWYPN NSASPFCNNG FCAGGLIDSH INFQPKNHLQ QQQLQLSEQH LKELYNASHG TVDPNLHVYN SKAVNSHMFA VQLEKQREEI DQYMKSEDEK
101: LRYMLREHGK QVMALLKKLE SRSLHVLREK DEEIAQAIKK RVELEEYLRK LEAENMKWQK VAQEKENMAL SLYKTLEEMT ESGNFLNNGM VANDAVSFCG
201: ETGGKEEMDE EEATAEKEKK RIECCGGVSE FEQNTRRGVM VCKSCHSRSS SFLFLPCRHL SCCKVCNTFL EACPVCSTPK KATIELRL

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.