CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24321	Soybean	cytosol	89.9	89.58
KRG94235	Soybean	cytosol	73.87	85.48
PGSC0003DMT400015829	Potato	nucleus	36.93	42.06
VIT_03s0038g02450.t01	Wine grape	nucleus	31.36	41.67
Solyc01g111610.2.1	Tomato	cytosol	35.19	41.56
KRH60696	Soybean	nucleus, plastid	37.98	37.33
KRH51394	Soybean	nucleus	36.93	36.93
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	33.8	36.74
CDX72513	Canola	cytosol	29.62	36.32
CDX69109	Canola	nucleus	25.78	36.1
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	27.53	35.75
CDY52651	Canola	cytosol	27.18	35.29
Solyc10g055560.1.1	Tomato	nucleus	32.75	34.81
CDY40647	Canola	cytosol	28.22	34.47
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	27.87	34.04
AT4G35070.1	Thale cress	cytosol	31.36	33.96
CDX73168	Canola	cytosol	28.57	32.67
CDY15019	Canola	cytosol	28.57	32.67
CDY17506	Canola	cytosol, nucleus, plastid	28.57	32.41
CDX76311	Canola	cytosol	28.57	32.41
Bra034672.1-P	Field mustard	cytosol	28.22	32.27
KRH57556	Soybean	nucleus	26.83	22.0
KRH04275	Soybean	nucleus	27.18	21.85
KRH43767	Soybean	nucleus	19.16	21.74
KRH77271	Soybean	plastid	24.04	21.43
KRH28216	Soybean	nucleus	24.04	20.97
KRH11729	Soybean	nucleus	22.65	20.77
KRH36722	Soybean	nucleus	21.95	20.32
KRH50476	Soybean	cytosol, nucleus, plastid	21.6	19.38
KRH74575	Soybean	cytosol	22.3	18.99
KRG89416	Soybean	nucleus	20.56	18.79
KRH69583	Soybean	nucleus	21.25	18.1
KRH13682	Soybean	nucleus	21.25	18.1
KRH15376	Soybean	nucleus, plastid	19.51	15.95
KRH05668	Soybean	nucleus	18.82	15.79

Protein Annotations

EMBL:ACUP02006776	EnsemblPlants:KRH29000	EnsemblPlantsGene:GLYMA_11G091300	EntrezGene:100789863	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647
PANTHER:PTHR42647:SF6	PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:KRH29000	ProteinID:KRH29000.1
SEG:seg	SUPFAM:SSF57850	UniParc:UPI000233D704	UniProt:I1LIH0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr11:-:6902550..6904149

Molecular Weight (calculated)

32819.0 Da

IEP (calculated)

5.944

GRAVY (calculated)

-0.634

Length

287 amino acids

Sequence
(BLAST)

001: MSIQAQWYPN NNSASPFCNN GYCAGGLIDS HINFQAKNHF QQQQQLSEQH LRELYNGSQG IVDPNLHVYN SEAVNSPVFA VQLEKQWEEI DQYMKSEDEK
101: LRYMIGEHGK QQVIALLKKL ESRSLNVLRE KDEEIAQAIK KRVELEDYLR KLEAENMKWQ KVAQEKEIMA LSLYKTLEEM TESGNFLNNG VVPNDAVSFC
201: GETGGKEEEM GEEATSEKEK KRIECCGEFE QNTRGRGVMV CKSCHSRSSS FLFLPCRHLS CCKVCNAFLE ACPVCRTPKK ATIELRL

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.