Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73168 | Canola | cytosol | 98.42 | 99.2 |
| CDY15019 | Canola | cytosol | 98.42 | 99.2 |
| CDX76311 | Canola | cytosol | 96.84 | 96.84 |
| Bra034672.1-P | Field mustard | cytosol | 96.05 | 96.81 |
| CDY40647 | Canola | cytosol | 75.1 | 80.85 |
| CDX72513 | Canola | cytosol | 69.96 | 75.64 |
| CDY52651 | Canola | cytosol | 65.61 | 75.11 |
| CDX69109 | Canola | nucleus | 59.29 | 73.17 |
| AT4G35070.1 | Thale cress | cytosol | 75.49 | 72.08 |
| VIT_03s0038g02450.t01 | Wine grape | nucleus | 35.97 | 42.13 |
| Solyc01g111610.2.1 | Tomato | cytosol | 37.15 | 38.68 |
| PGSC0003DMT400068728 | Potato | mitochondrion, nucleus | 40.32 | 38.64 |
| PGSC0003DMT400015829 | Potato | nucleus | 38.34 | 38.49 |
| Solyc10g055560.1.1 | Tomato | nucleus | 40.32 | 37.78 |
| KRH51394 | Soybean | nucleus | 36.76 | 32.4 |
| KRH60696 | Soybean | nucleus, plastid | 34.78 | 30.14 |
| KRH29000 | Soybean | cytosol | 32.41 | 28.57 |
| KRH24321 | Soybean | cytosol | 32.41 | 28.47 |
| CDY34127 | Canola | extracellular | 6.72 | 28.33 |
| KRG94235 | Soybean | cytosol | 27.27 | 27.82 |
| CDY09609 | Canola | cytosol | 21.34 | 21.86 |
| CDY40841 | Canola | cytosol | 24.51 | 20.74 |
| CDY43447 | Canola | nucleus | 24.51 | 20.53 |
| CDY09318 | Canola | cytosol | 18.97 | 20.51 |
| CDY07541 | Canola | cytosol | 18.97 | 20.51 |
| CDX94520 | Canola | cytosol | 18.97 | 20.51 |
| CDY21311 | Canola | cytosol | 18.97 | 20.51 |
| CDX77733 | Canola | nucleus | 24.11 | 20.33 |
| CDY26402 | Canola | cytosol | 23.72 | 20.27 |
| CDX87407 | Canola | nucleus | 25.3 | 20.25 |
| CDX88507 | Canola | nucleus | 23.72 | 20.13 |
| CDY33511 | Canola | nucleus | 24.11 | 20.13 |
| CDY24237 | Canola | nucleus | 25.69 | 20.06 |
| CDY17103 | Canola | cytosol | 23.32 | 19.93 |
| CDX79294 | Canola | nucleus | 23.72 | 19.74 |
| CDY43390 | Canola | cytosol | 25.3 | 19.69 |
| CDY06767 | Canola | cytosol | 23.32 | 19.41 |
| CDY17048 | Canola | cytosol | 23.72 | 19.29 |
| CDY51856 | Canola | cytosol | 22.92 | 19.14 |
| CDX90458 | Canola | cytosol | 22.92 | 19.08 |
| CDY13070 | Canola | cytosol | 20.95 | 19.0 |
| CDY71192 | Canola | cytosol | 20.95 | 18.93 |
| CDY37172 | Canola | cytosol | 22.53 | 18.87 |
| CDY46345 | Canola | cytosol | 20.95 | 18.79 |
| CDY18062 | Canola | cytosol | 20.95 | 18.79 |
| CDY01615 | Canola | cytosol | 22.53 | 18.69 |
| CDY03162 | Canola | cytosol | 23.72 | 18.63 |
| CDY71607 | Canola | cytosol | 22.13 | 18.3 |
| CDY51918 | Canola | cytosol | 20.55 | 18.12 |
| CDX82568 | Canola | nucleus | 23.72 | 17.65 |
| CDY64561 | Canola | nucleus | 23.32 | 17.35 |
| CDX93396 | Canola | cytosol | 20.55 | 15.48 |
| CDY24542 | Canola | nucleus | 19.76 | 15.29 |
| CDY20611 | Canola | nucleus | 20.55 | 15.25 |
| CDY37958 | Canola | cytosol, plastid | 20.16 | 15.04 |
| CDY20963 | Canola | nucleus | 19.76 | 14.79 |
| CDY23552 | Canola | cytosol | 9.88 | 11.52 |
Protein Annotations
| EnsemblPlants:CDY17506 | EnsemblPlantsGene:GSBRNA2T00095701001 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD |
| ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF6 | PIRSF:PIRSF036836 | ProteinID:CDY17506 | ProteinID:CDY17506.1 |
| SEG:seg | UniParc:UPI0004EE6014 | UniProt:A0A078FWZ5 | MapMan:35.1 | : | : |
Description
BnaC03g65570DBnaC03g65570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWZ5]
Coordinates
chrLK032074:+:413988..415321
Molecular Weight (calculated)
28719.4 Da
IEP (calculated)
7.014
GRAVY (calculated)
-0.592
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIQAQLHYN ASNVNQIGTG GSLLNNNGGI GIDQSYTNNH NLLAQKDLNQ HALFQHQQYR SQSVLDAYME RQKQGIDQFI RVQNERLRYA LQEQRKQEME
101: TMLRKMEAKA LVLMTRKEEE MSRALSKNME LEDLLRKMEM ENQTWQRLAR ENEAMVATLN STLEQARERA AAATCHNEAI AVEDEGSCCG GDDFPAKKKK
201: VSSCCWNCGS NGETRVLFLP CRHLCCCTGC EDGLVLCPMC SAPKKNRIEA FIF
101: TMLRKMEAKA LVLMTRKEEE MSRALSKNME LEDLLRKMEM ENQTWQRLAR ENEAMVATLN STLEQARERA AAATCHNEAI AVEDEGSCCG GDDFPAKKKK
201: VSSCCWNCGS NGETRVLFLP CRHLCCCTGC EDGLVLCPMC SAPKKNRIEA FIF
001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
Arabidopsis Description
At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.