CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68763
CDX69199
CDX72310
CDX72576
CDX74513
CDX75553
CDX75733
CDX79518
CDX82514
CDX83484
CDX84697
CDX92626
CDY01647
CDY03470
CDY08909
CDY10996
CDY13441
CDY14697
CDY17152
CDY19471
CDY20325
CDY21916
CDY22079
CDY22251
CDY23304
CDY23361
CDY24829
CDY34269
CDY36029
CDY36432
CDY37741
CDY44222
CDY44770
CDY45583
CDY47053
CDY49077
CDY53958
CDY60852
CDY66712
CDY72107

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	CDY36029	AT1G45145.1	21798944
AT4G19700.1	CDY53958	AT1G45145.1	21798944
AT4G19700.1	CDY20325	AT2G24570.1	21798944
AT4G19700.1	CDY45583	AT2G24570.1	21798944
AT4G19700.1	CDX79518	AT2G33210.1	21798944
AT4G19700.1	CDX84697	AT2G33210.1	21798944
AT4G19700.1	CDY17152	AT2G33210.1	21798944
AT4G19700.1	CDY19471	AT2G33210.1	21798944
AT4G19700.1	CDY37741	AT2G33210.1	21798944
AT4G19700.1	CDY66712	AT2G33210.1	21798944
AT4G19700.1	CDY72107	AT2G33210.1	21798944
AT4G19700.1	CDX83484	AT2G43370.1	21798944
AT4G19700.1	CDY14697	AT2G43370.1	21798944
AT4G19700.1	CDY22251	AT2G43370.1	21798944
AT4G19700.1	CDY23361	AT2G43370.1	21798944
AT4G19700.1	CDY44222	AT2G43370.1	21798944
AT4G19700.1	CDX75733	AT3G13860.1	21798944
AT4G19700.1	CDX82514	AT3G13860.1	21798944
AT4G19700.1	CDY21916	AT4G02770.1	21798944
AT4G19700.1	CDY22079	AT4G02770.1	21798944
AT4G19700.1	CDX92626	AT4G24240.1	21798944
AT4G19700.1	CDY03470	AT4G24240.1	21798944
AT4G19700.1	CDY10996	AT4G24240.1	21798944
AT4G19700.1	CDY34269	AT4G24240.1	21798944
AT4G19700.1	CDX68763	AT4G31550.1	21798944
AT4G19700.1	CDX72310	AT4G31550.1	21798944
AT4G19700.1	CDY13441	AT4G31550.1	21798944
AT4G19700.1	CDY23304	AT4G31550.1	21798944
AT4G19700.1	CDY36432	AT4G31550.1	21798944
AT4G19700.1	CDY60852	AT4G31550.1	21798944
AT4G19700.1	CDX69199	AT4G36110.1	21798944
AT4G19700.1	CDX72576	AT4G36110.1	21798944
AT4G19700.1	CDX75553	AT4G36110.1	21798944
AT4G19700.1	CDY08909	AT4G36110.1	21798944
AT4G19700.1	CDY24829	AT4G36110.1	21798944
AT4G19700.1	CDY47053	AT4G36110.1	21798944
AT4G19700.1	CDY44770	AT5G08330.1	21798944
AT4G19700.1	CDX74513	AT5G38640.1	21798944
AT4G19700.1	CDY01647	AT5G38640.1	21798944
AT4G19700.1	CDY49077	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07541	Canola	cytosol	100.0	100.0
CDY09318	Canola	cytosol	100.0	100.0
CDX94520	Canola	cytosol	100.0	100.0
CDY51918	Canola	cytosol	76.07	62.02
CDY71607	Canola	cytosol	79.91	61.11
CDY01615	Canola	cytosol	78.21	60.0
AT4G19700.1	Thale cress	cytosol	77.78	59.87
CDY26402	Canola	cytosol	61.97	48.99
CDY71192	Canola	cytosol	58.55	48.93
CDY13070	Canola	cytosol	57.27	48.03
CDY46345	Canola	cytosol	55.98	46.45
CDY18062	Canola	cytosol	55.56	46.1
VIT_10s0042g01070.t01	Wine grape	nucleus	49.15	37.95
KRH36722	Soybean	nucleus	49.57	37.42
CDY34127	Canola	extracellular	9.4	36.67
KRH11729	Soybean	nucleus	48.72	36.42
PGSC0003DMT400062617	Potato	nucleus	46.15	36.0
KRG89416	Soybean	nucleus	47.01	35.03
Solyc02g031710.2.1	Tomato	nucleus	46.15	34.84
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	47.86	34.67
GSMUA_Achr2P13160_001	Banana	plastid	36.32	34.41
KRH50476	Soybean	cytosol, nucleus, plastid	47.01	34.38
GSMUA_Achr4P28300_001	Banana	nucleus	34.62	33.61
CDX88507	Canola	nucleus	42.73	33.56
GSMUA_Achr7P00850_001	Banana	plastid	32.91	33.48
GSMUA_Achr4P23050_001	Banana	nucleus	26.5	32.98
CDX87407	Canola	nucleus	44.02	32.59
GSMUA_Achr4P32070_001	Banana	nucleus	39.32	32.17
GSMUA_Achr5P02100_001	Banana	plastid	33.33	31.97
CDX79294	Canola	nucleus	39.74	30.59
Solyc02g069180.2.1	Tomato	plastid	34.62	28.62
CDY64561	Canola	nucleus	41.45	28.53
GSMUA_Achr6P31690_001	Banana	nucleus	36.32	28.52
TraesCS3B01G484600.1	Wheat	cytosol	33.33	28.36
TraesCS3A01G448500.1	Wheat	mitochondrion	35.47	28.33
TraesCS3D01G441300.1	Wheat	mitochondrion	35.04	28.28
TraesCS3D01G441000.1	Wheat	mitochondrion	35.04	28.28
CDY24237	Canola	nucleus	38.89	28.09
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	28.63	28.03
CDY43390	Canola	cytosol	38.89	28.0
CDX82568	Canola	nucleus	40.6	27.94
TraesCS7D01G431300.1	Wheat	mitochondrion	36.75	27.48
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	35.47	27.39
TraesCS4B01G019600.1	Wheat	mitochondrion	35.47	26.77
HORVU4Hr1G003180.3	Barley	mitochondrion	35.04	26.71
HORVU6Hr1G021880.1	Barley	plastid	29.49	26.44
HORVU6Hr1G021960.1	Barley	plastid	29.49	26.44
TraesCS4A01G293700.1	Wheat	mitochondrion	34.62	26.3
GSMUA_Achr9P09830_001	Banana	nucleus	35.9	26.17
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	29.49	25.46
TraesCS7A01G442300.1	Wheat	mitochondrion	34.19	25.24
TraesCS7A01G442100.1	Wheat	mitochondrion	33.76	25.16
TraesCS6B01G149100.1	Wheat	nucleus	28.21	25.1
TraesCS6D01G110700.1	Wheat	nucleus	28.21	25.1
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	32.91	25.08
TraesCS7B01G340700.1	Wheat	mitochondrion	33.33	25.0
HORVU7Hr1G100540.2	Barley	mitochondrion	32.48	25.0
TraesCS7A01G441900.1	Wheat	mitochondrion	33.76	25.0
TraesCS7B01G340600.1	Wheat	mitochondrion	33.33	25.0
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	34.62	24.55
TraesCS7D01G431200.1	Wheat	mitochondrion	32.05	24.35
TraesCS6A01G120700.1	Wheat	nucleus	27.35	24.33
EER91098	Sorghum	nucleus	36.75	24.23
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	32.48	24.2
TraesCS7B01G340500.1	Wheat	mitochondrion	32.48	24.13
CDX69109	Canola	nucleus	20.09	22.93
CDY52651	Canola	cytosol	21.37	22.62
CDY33511	Canola	nucleus	26.5	20.46
Zm00001d033419_P001	Maize	plastid	24.36	20.36
CDX77733	Canola	nucleus	26.07	20.33
CDX72513	Canola	cytosol	20.09	20.09
CDY40647	Canola	cytosol	20.09	20.0
CDY43447	Canola	nucleus	25.64	19.87
CDY09609	Canola	cytosol	20.94	19.84
CDX76311	Canola	cytosol	21.37	19.76
CDY03162	Canola	cytosol	26.92	19.57
CDX73168	Canola	cytosol	20.94	19.52
CDY15019	Canola	cytosol	20.94	19.52
CDY51856	Canola	cytosol	25.21	19.47
CDY24542	Canola	nucleus	26.92	19.27
CDY20611	Canola	nucleus	27.78	19.06
CDY17506	Canola	cytosol, nucleus, plastid	20.51	18.97
CDY20963	Canola	nucleus	27.35	18.93
CDX93396	Canola	cytosol	26.92	18.75
CDY37958	Canola	cytosol, plastid	26.92	18.58
CDY37172	Canola	cytosol	23.93	18.54
CDX90458	Canola	cytosol	23.93	18.42
CDY40841	Canola	cytosol	22.65	17.73
CDY17103	Canola	cytosol	22.22	17.57
CDY17048	Canola	cytosol	23.08	17.36
CDY06767	Canola	cytosol	21.79	16.78
CDY23552	Canola	cytosol	14.96	16.13

Protein Annotations

EnsemblPlants:CDY21311	EnsemblPlantsGene:GSBRNA2T00015650001	Gene3D:3.30.40.10	GO:A0A078F2F2	InterPro:E3ligase_BOI_like	InterPro:IPR013083
InterPro:Znf_RING/FYVE/PHD	KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12
PIRSF:PIRSF036836	ProteinID:CDY07541.1	ProteinID:CDY09318.1	ProteinID:CDY21311	ProteinID:CDY21311.1	UniParc:UPI0004EECC96
UniPathway:UPA00144	UniProt:A0A078F2F2	MapMan:35.1	:	:	:

Description

BnaC03g29950DBnaC03g29950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2F2]

Coordinates

chrLK032119:+:478786..479490

Molecular Weight (calculated)

25897.0 Da

IEP (calculated)

7.642

GRAVY (calculated)

-0.299

Length

234 amino acids

Sequence
(BLAST)

001: MAVEASTKRP RGSQYLDTDA NFTPAVKRRS GAFGLSSSLI NVELLCQIQN QQQLEIDRFV AQQTEKLKID IEARQRTQTR MLASAVQNAI AKKVKEKDDE
101: IVRIRNINFV LQEGVKSLYV ENQIWRDIAQ RNEEHANILR TNLDQVLAQM ETLQTVATAV DDDAESSCGS WVEGGEAIRA VSSGCKRCGE REGSLLVLPC
201: RHLCLCTVRG SASLRTCPVC GSVMNASVHV NMSS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.