CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90930
CDX91293
CDX97278
CDY18011
CDY21898
CDY22062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36110.1	CDX90930	AT4G02590.1	21798944
AT4G36110.1	CDX91293	AT4G02590.1	21798944
AT4G36110.1	CDX97278	AT4G02590.1	21798944
AT4G36110.1	CDY18011	AT4G02590.1	21798944
AT4G36110.1	CDY21898	AT4G02590.1	21798944
AT4G36110.1	CDY22062	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010501.1-P	Field mustard	mitochondrion	99.04	99.04
CDY24829	Canola	mitochondrion	99.04	99.04
CDY47053	Canola	mitochondrion, plastid	86.54	90.91
CDX69199	Canola	mitochondrion, plastid	90.38	90.38
CDX75553	Canola	mitochondrion, plastid	90.38	90.38
AT4G36110.1	Thale cress	mitochondrion	89.42	89.42
CDX72576	Canola	mitochondrion	84.62	88.89
CDY68553	Canola	cytosol, mitochondrion, nucleus	75.0	72.22
VIT_04s0023g03230.t01	Wine grape	mitochondrion	72.12	72.12
Solyc03g033590.1.1	Tomato	mitochondrion	68.27	71.72
CDY38169	Canola	cytosol, mitochondrion, nucleus	74.04	71.3
CDX75460	Canola	mitochondrion	73.08	71.03
CDX72500	Canola	mitochondrion	73.08	71.03
CDX76303	Canola	mitochondrion	73.08	71.03
CDY63257	Canola	mitochondrion	73.08	71.03
CDY70461	Canola	mitochondrion	73.08	71.03
CDX69086	Canola	mitochondrion	72.12	70.09
PGSC0003DMT400058186	Potato	cytosol	67.31	70.0
Solyc02g062230.1.1	Tomato	cytosol, mitochondrion	64.42	69.79
KRH28787	Soybean	cytosol, mitochondrion	69.23	69.23
PGSC0003DMT400075050	Potato	cytosol	63.46	68.75
CDY42589	Canola	mitochondrion	69.23	68.57
CDY41947	Canola	mitochondrion	69.23	68.57
CDY54551	Canola	cytosol, mitochondrion, nucleus	71.15	68.52
CDY30334	Canola	cytosol, mitochondrion, nucleus	71.15	68.52
KRH08093	Soybean	cytosol	68.27	66.98
KRH69796	Soybean	cytosol	68.27	66.36
CDY45331	Canola	mitochondrion	68.27	66.36
CDY22408	Canola	mitochondrion	66.35	66.35
CDX72733	Canola	mitochondrion	66.35	66.35
CDY47511	Canola	mitochondrion	68.27	65.74
CDY39041	Canola	mitochondrion	68.27	65.74
CDX68122	Canola	mitochondrion	68.27	65.74
CDX73181	Canola	mitochondrion	68.27	65.74
CDY13560	Canola	mitochondrion	68.27	65.74
CDX82007	Canola	mitochondrion	65.38	65.38
CDY13831	Canola	mitochondrion	65.38	65.38
CDX85905	Canola	mitochondrion	67.31	64.81
PGSC0003DMT400009439	Potato	mitochondrion	62.5	64.36
Solyc02g084010.1.1	Tomato	mitochondrion	62.5	63.73
CDX89731	Canola	mitochondrion	65.38	62.96
CDY02251	Canola	mitochondrion	65.38	62.96
CDY18596	Canola	cytosol, mitochondrion, nucleus	56.73	59.0
CDY44482	Canola	mitochondrion	63.46	58.41
CDX81404	Canola	cytosol, mitochondrion, nucleus	55.77	58.0
CDY55152	Canola	cytosol, mitochondrion	61.54	56.64
CDY29398	Canola	cytosol, mitochondrion	59.62	54.87
CDX73741	Canola	cytosol, mitochondrion, nucleus	49.04	49.51
KRH76667	Soybean	cytosol, plastid	68.27	47.02
CDY20904	Canola	cytosol, extracellular	50.0	40.94
CDX90724	Canola	cytosol	30.77	32.65
CDY05061	Canola	cytosol	30.77	32.65
CDY18466	Canola	cytosol, mitochondrion	31.73	27.97
CDX79712	Canola	cytosol	31.73	26.61
CDY46750	Canola	cytosol	31.73	26.61
CDX70314	Canola	mitochondrion	26.92	26.17
CDY10388	Canola	mitochondrion	26.92	26.17
CDX91329	Canola	cytosol	30.77	25.6
CDX74993	Canola	cytosol	30.77	25.6
CDY13307	Canola	cytosol	31.73	25.19
CDX67565	Canola	cytosol	31.73	25.19
CDY62892	Canola	mitochondrion	25.96	24.32
CDY44355	Canola	mitochondrion	25.96	24.32
CDX78160	Canola	cytosol	29.81	23.85
CDX73568	Canola	cytosol	29.81	23.85

Protein Annotations

EnsemblPlants:CDY08909	EnsemblPlantsGene:GSBRNA2T00000929001	GO:A0A078F7A4	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF41	PFAM:PF02519	ProteinID:CDY08909	ProteinID:CDY08909.1
UniParc:UPI000189D164	UniProt:A0A078F7A4	MapMan:35.1	:	:	:

Description

BnaC08g11390DBnaC08g11390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7A4]

Coordinates

chrLK031990:+:452078..453743

Molecular Weight (calculated)

11929.4 Da

IEP (calculated)

8.845

GRAVY (calculated)

-0.266

Length

104 amino acids

Sequence
(BLAST)

001: MALKKSNKVA ASQAAYLKKI LKRCSSLGKK NQSNCYFNDV PKGHFPVYVG QQRSRYVVPI SWLDHPEFQT LLQLAEEEFG FEHDMGLTIP CDEVVFQSLI
101: SMFR

Best Arabidopsis Sequence Match ( AT4G36110.1 )
(BLAST)

001: MAIKKSNKAA LSQAASLKQI LKRCSSLGKK NQGNCYFNDV PKGHFPVYVG QHRSRYVVPI SWLDHHEFQS LLQLAEEEFG FEHEMGLTIP CDEVVFRSLI
101: SMFR

Arabidopsis Description

SAUR9 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.