Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69498
CDX69609
CDX70540
CDX76844
CDX77869
CDX78558
CDX83022
CDX83516
CDX85614
CDX86900
CDX87442
CDX88464
CDX89423
CDX91084
CDX91686
CDX92692
CDX94458
CDX99654
CDY11069
CDY14860
CDY17794
CDY21793
CDY26463
CDY34804
CDY39438
CDY41474
CDY42818
CDY46357
CDY50830
CDY53423
CDY58422
CDY68147
CDY69078

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02590.1 CDX91686 AT1G22630.1 21798944
AT4G02590.1 CDY41474 AT1G22630.1 21798944
AT4G02590.1 CDX87442 AT1G78680.1 21798944
AT4G02590.1 CDX88464 AT1G78680.1 21798944
AT4G02590.1 CDX76844 AT2G24020.1 21798944
AT4G02590.1 CDY34804 AT2G24020.1 21798944
AT4G02590.1 CDX83516 AT2G42870.1 21798944
AT4G02590.1 CDY14860 AT2G42870.1 21798944
AT4G02590.1 CDY42818 AT2G42870.1 21798944
AT4G02590.1 CDY50830 AT2G42870.1 21798944
AT4G02590.1 CDY68147 AT2G42870.1 21798944
AT4G02590.1 CDY46357 AT3G28715.1 21798944
AT4G02590.1 CDX77869 AT3G47640.1 21798944
AT4G02590.1 CDX83022 AT3G47640.1 21798944
AT4G02590.1 CDX86900 AT3G47640.1 21798944
AT4G02590.1 CDY17794 AT3G47640.1 21798944
AT4G02590.1 CDY21793 AT3G47640.1 21798944
AT4G02590.1 CDY53423 AT3G47640.1 21798944
AT4G02590.1 CDX89423 AT4G25315.1 21798944
AT4G02590.1 CDX92692 AT4G25315.1 21798944
AT4G02590.1 CDX94458 AT4G25315.1 21798944
AT4G02590.1 CDY11069 AT4G25315.1 21798944
AT4G02590.1 CDX69609 AT5G14070.1 21798944
AT4G02590.1 CDX70540 AT5G14070.1 21798944
AT4G02590.1 CDX78558 AT5G14070.1 21798944
AT4G02590.1 CDX85614 AT5G14070.1 21798944
AT4G02590.1 CDX91084 AT5G14070.1 21798944
AT4G02590.1 CDY58422 AT5G14070.1 21798944
AT4G02590.1 CDX69498 AT5G15802.1 21798944
AT4G02590.1 CDY26463 AT5G15802.1 21798944
AT4G02590.1 CDX99654 AT5G45620.1 21798944
AT4G02590.1 CDY39438 AT5G45620.1 21798944
AT4G02590.1 CDY69078 AT5G45620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22062 Canola nucleus 98.01 97.04
AT4G02590.1 Thale cress nucleus 92.69 90.0
CDY18011 Canola nucleus 90.37 89.47
CDX91293 Canola nucleus 88.37 89.26
CDX90930 Canola nucleus 90.7 88.06
CDX97278 Canola nucleus 86.05 86.62
CDY18143 Canola nucleus 82.39 81.05
CDX89919 Canola nucleus 82.72 80.06
KRG95612 Soybean nucleus 71.43 73.63
Os07t0182200-01 Rice cytosol 33.22 73.53
VIT_07s0141g00220.t01 Wine grape nucleus 70.1 73.01
KRH32094 Soybean nucleus 68.11 72.44
KRH67287 Soybean nucleus 70.1 72.26
PGSC0003DMT400049768 Potato nucleus 70.43 70.2
Solyc09g065820.2.1 Tomato nucleus 70.1 69.87
KRH55381 Soybean cytosol 15.61 68.12
GSMUA_Achr5P03100_001 Banana nucleus 52.49 57.66
GSMUA_Achr4P21070_001 Banana nucleus 57.14 57.33
Zm00001d013073_P002 Maize nucleus 53.82 56.84
KXG37359 Sorghum nucleus 53.49 56.69
OQU88567 Sorghum nucleus 51.83 56.32
TraesCS5B01G445900.1 Wheat nucleus 52.16 55.87
TraesCS5D01G449200.1 Wheat nucleus 52.16 55.87
Os03t0797600-01 Rice nucleus 54.49 55.78
Zm00001d018967_P001 Maize nucleus 52.49 55.44
TraesCS5A01G441900.1 Wheat nucleus 49.5 53.02
HORVU5Hr1G106310.3 Barley nucleus 50.5 48.72
GSMUA_Achr9P25560_001 Banana nucleus 56.81 48.44
CDY55014 Canola nucleus 35.22 36.68
CDY02785 Canola nucleus 35.22 35.81
CDY11836 Canola nucleus 33.55 35.31
CDY32733 Canola nucleus 35.22 35.1
CDY62262 Canola nucleus 34.55 34.44
CDY46132 Canola endoplasmic reticulum 19.93 34.09
CDX88653 Canola nucleus 33.89 34.0
CDY20290 Canola endoplasmic reticulum, extracellular 22.59 33.5
CDY34780 Canola nucleus 36.54 32.54
CDX68710 Canola nucleus 35.22 32.42
CDX76819 Canola nucleus 36.54 32.35
CDY28232 Canola nucleus 34.88 32.11
CDY20289 Canola nucleus 21.59 30.81
CDY37185 Canola mitochondrion 9.63 29.59
CDY46133 Canola nucleus 16.28 25.65
CDY24734 Canola plastid 9.97 21.13
CDY01438 Canola nucleus, plastid 12.96 17.89
CDY12804 Canola nucleus, plastid 12.62 17.59
CDY65390 Canola nucleus 11.3 16.27
CDY35224 Canola nucleus 13.29 15.44
CDY00603 Canola nucleus, plastid 13.62 14.96
CDY67566 Canola nucleus, plastid 13.62 14.96
CDX91917 Canola nucleus 14.95 12.97
CDY44048 Canola nucleus, plastid 14.62 12.9
CDY22448 Canola nucleus, plastid 14.62 12.5
CDX75629 Canola nucleus 14.29 12.43
CDX83214 Canola nucleus 14.29 12.36
CDX69281 Canola nucleus, plastid 14.29 12.32
CDY14866 Canola nucleus 16.28 12.16
CDY30375 Canola nucleus 16.28 12.07
CDY29961 Canola nucleus 16.28 12.04
CDX70453 Canola nucleus 16.28 12.04
CDX74328 Canola nucleus 14.95 11.63
CDX80064 Canola nucleus 15.28 11.5
CDX83509 Canola nucleus 15.61 11.38
CDY31989 Canola nucleus 17.61 11.13
CDY21498 Canola nucleus 14.29 11.11
CDY66254 Canola nucleus 14.62 11.0
CDY65446 Canola nucleus 11.96 10.88
CDY42809 Canola nucleus 14.95 10.87
CDY06865 Canola nucleus 12.96 10.86
CDX67873 Canola nucleus 10.96 10.75
CDY06026 Canola nucleus 15.61 10.63
CDX71916 Canola nucleus 15.61 10.61
CDY35220 Canola nucleus 12.96 10.51
CDY11401 Canola extracellular 12.29 10.51
CDY05725 Canola nucleus 17.61 10.45
CDX83349 Canola nucleus 13.62 10.15
CDX76616 Canola extracellular 11.96 10.06
CDY06870 Canola nucleus 14.95 9.89
CDY50911 Canola nucleus 8.64 9.59
CDY06867 Canola nucleus 15.28 9.54
CDX94963 Canola nucleus 15.28 9.24
CDY22636 Canola nucleus 14.95 9.16
CDY64745 Canola nucleus 15.28 9.16
CDY06358 Canola nucleus 14.62 8.96
CDY35222 Canola nucleus 14.29 7.45
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:A0A078GB12UniProt:A0A078GB12EnsemblPlants:CDY21898ProteinID:CDY21898
ProteinID:CDY21898.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00018220001
InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638PFAM:PF00010PFscan:PS50888PANTHER:PTHR16223
PANTHER:PTHR16223:SF15SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EE9797InterPro:bHLH_domSEG:seg
Description
BnaC09g00040DBnaC09g00040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB12]
Coordinates
chrLK032126:-:11227..13643
Molecular Weight (calculated)
32165.3 Da
IEP (calculated)
6.170
GRAVY (calculated)
-0.492
Length
301 amino acids
Sequence
(BLAST)
001: MASNNNNPHE NLSDQTPSDD FFEQILGLPN FSASSSDGGL GGGGAPPMML QLGSGEEGGH MGGLGGGSGF HNQMFPLGLS LEQGKGQGFL RPEGGSLGTG
101: KRFSDDVMKP VFHGQPMQQQ PAPAAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF LRLQVKVLSM
201: SRLGGAGAVA PLVTDMPLSS SVEDESGEGG RAPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTTS VVKPESNPPP
301: P
Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)
001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
Arabidopsis Description
UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.