Factsheet for Os07t0182200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0511300-01
Os01t0587000-01
Os02t0180200-01
Os02t0512400-01
Os03t0214600-01
Os03t0379300-01
Os03t0414400-01
Os04t0393500-01
Os05t0105800-01
Os05t0517500-01
Os07t0628500-01
Os08t0494375-00
Os09t0516800-01
Os11t0601700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	Os05t0105800-01	AT1G22630.1	21798944
AT4G02590.1	Os05t0517500-01	AT1G78680.1	21798944
AT4G02590.1	Os02t0180200-01	AT2G24020.1	21798944
AT4G02590.1	Os01t0587000-01	AT3G28715.1	21798944
AT4G02590.1	Os03t0379300-01	AT3G47640.1	21798944
AT4G02590.1	Os07t0628500-01	AT3G47640.1	21798944
AT4G02590.1	Os08t0494375-00	AT3G47640.1	21798944
AT4G02590.1	Os11t0601700-01	AT3G47640.1	21798944
AT4G02590.1	Os09t0516800-01	AT4G25315.1	21798944
AT4G02590.1	Os02t0512400-01	AT5G14070.1	21798944
AT4G02590.1	Os04t0393500-01	AT5G14070.1	21798944
AT4G02590.1	Os03t0414400-01	AT5G15802.1	21798944
AT4G02590.1	Os01t0511300-01	AT5G45620.1	21798944
AT4G02590.1	Os03t0214600-01	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036256.1-P	Field mustard	nucleus	73.53	43.86
Os03t0797600-01	Rice	nucleus	92.65	42.86
Bra018539.1-P	Field mustard	nucleus	70.59	37.8
KRH32094	Soybean	nucleus	75.0	36.04
VIT_07s0141g00220.t01	Wine grape	nucleus	73.53	34.6
PGSC0003DMT400049768	Potato	nucleus	75.74	34.11
KRG95612	Soybean	nucleus	72.79	33.9
CDX91293	Canola	nucleus	74.26	33.89
Solyc09g065820.2.1	Tomato	nucleus	75.0	33.77
CDY18011	Canola	nucleus	74.26	33.22
CDY21898	Canola	nucleus	73.53	33.22
KRH67287	Soybean	nucleus	71.32	33.22
GSMUA_Achr9P25560_001	Banana	nucleus	86.03	33.14
PGSC0003DMT400034840	Potato	nucleus	72.06	33.11
Bra000872.1-P	Field mustard	nucleus	75.0	33.01
PGSC0003DMT400015596	Potato	nucleus	73.53	33.0
VIT_05s0020g04620.t01	Wine grape	nucleus	75.74	32.91
Solyc09g083220.2.1	Tomato	nucleus	73.53	32.89
CDY22062	Canola	nucleus	72.79	32.57
CDX90930	Canola	nucleus	73.53	32.26
AT4G02590.1	Thale cress	nucleus	73.53	32.26
CDX97278	Canola	nucleus	69.85	31.77
Solyc03g005350.2.1	Tomato	nucleus	69.12	31.76
VIT_14s0030g02230.t01	Wine grape	nucleus	75.74	31.12
CDY18143	Canola	nucleus	69.85	31.05
Bra033368.1-P	Field mustard	nucleus	69.85	30.55
CDX89919	Canola	nucleus	69.85	30.55
KRH34087	Soybean	nucleus	69.85	28.96
AT1G03040.3	Thale cress	nucleus	70.59	28.83
KRG92679	Soybean	nucleus	69.85	28.61
Os02t0795800-00	Rice	endoplasmic reticulum, mitochondrion, nucleus, plastid	54.41	26.43
Os06t0184000-00	Rice	nucleus	52.94	18.09
KRH55381	Soybean	cytosol	8.82	17.39
Os04t0618600-01	Rice	nucleus	20.59	15.47
Os06t0193400-01	Rice	nucleus	47.79	13.6
Os02t0564700-01	Rice	nucleus	50.0	12.98
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	16.91	11.68
Os02t0805250-00	Rice	nucleus	22.79	11.07
Os03t0782500-01	Rice	nucleus	22.06	7.32
Os10t0556200-01	Rice	nucleus	25.0	7.31
Os12t0610200-01	Rice	nucleus	23.53	7.19
Os07t0143200-01	Rice	nucleus	19.85	6.52
Os05t0139100-01	Rice	nucleus	22.06	5.94
Os01t0286100-01	Rice	nucleus	24.26	5.18
Os03t0639300-01	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.32	EMBL:AK066623	ProteinID:BAF20964.1	ProteinID:BAT00331.1	GO:GO:0001046	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os07g0182200	EnsemblPlants:Os07t0182200-01	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF103	UniProt:Q0D859	SUPFAM:SSF47459	UniParc:UPI0000E12A09	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

basic helix-loop-helix protein 099Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008). (Os07t0182200-01)

Coordinates

chr7:+:4339902..4342192

Molecular Weight (calculated)

14864.9 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.237

Length

136 amino acids

Sequence
(BLAST)

001: MRALQDLVPN TNKTDRAAML DEILDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADIPISVK GEASDSGSKQ QIWEKWSTDG TEKQVAKLME EDIGAAMQFL
101: QSKALCMMPI SLAMAIYDTQ HSQDGHSVKP EPNTPS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.