Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0687500-01 | |
| Os02t0828566-01 | |
| Os03t0422702-00 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G47640.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os02t0828566-01 | AT5G08330.1 | 21798944 |
| AT3G47640.1 | Os03t0422702-00 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39270 | Sorghum | nucleus | 67.46 | 62.73 |
| Zm00001d029339_P001 | Maize | nucleus | 67.06 | 62.59 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 61.9 | 57.78 |
| TraesCS2D01G079100.1 | Wheat | plastid | 61.9 | 47.42 |
| TraesCS2A01G081300.1 | Wheat | plastid | 62.7 | 46.75 |
| Os07t0628500-01 | Rice | nucleus | 48.81 | 46.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.92 | 41.51 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 64.29 | 41.22 |
| CDY17794 | Canola | cytosol | 12.3 | 39.24 |
| Os08t0494375-00 | Rice | nucleus | 26.19 | 38.37 |
| CDX86900 | Canola | cytosol | 9.92 | 37.31 |
| KRH03461 | Soybean | nucleus | 32.54 | 36.44 |
| KRH56921 | Soybean | nucleus | 31.75 | 36.04 |
| Os11t0601700-01 | Rice | nucleus | 35.32 | 32.01 |
| CDX83022 | Canola | nucleus | 30.16 | 31.8 |
| CDX77869 | Canola | nucleus | 29.37 | 31.76 |
| AT3G47640.1 | Thale cress | nucleus | 30.16 | 31.67 |
| CDY21793 | Canola | nucleus | 28.97 | 31.33 |
| Bra019509.1-P | Field mustard | nucleus | 28.97 | 31.2 |
| PGSC0003DMT400001617 | Potato | nucleus | 29.76 | 31.12 |
| Solyc03g116340.2.1 | Tomato | nucleus | 29.37 | 30.71 |
| CDY53423 | Canola | nucleus | 26.98 | 28.57 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 28.17 | 27.73 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 31.75 | 24.39 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 21.03 | 23.25 |
| Bra033788.1-P | Field mustard | nucleus | 20.63 | 11.85 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.4 | Gene3D:4.10.280.10 | EntrezGene:4332972 | ProteinID:AAL58252.1 | ProteinID:ABF96248.1 |
| ProteinID:ABF96249.1 | EMBL:AK061515 | EMBL:AK068704 | ProteinID:BAF12148.1 | ProteinID:BAS84435.1 | ncoils:Coil |
| ProteinID:EEE59148.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os03g0379300 | EnsemblPlants:Os03t0379300-01 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF62 | UniProt:Q10KL8 | SUPFAM:SSF47459 | UniParc:UPI00000A8EC6 |
| RefSeq:XP_015633301.1 | RefSeq:XP_015633302.1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
basic helix-loop-helix protein 063Helix-loop-helix DNA-binding domain containing protein. (Os03t0379300-01);Helix-loop-helix DNA-binding domain containing protein. (Os03t0379300-02)
Coordinates
chr3:+:15000100..15002138
Molecular Weight (calculated)
27892.1 Da
IEP (calculated)
5.768
GRAVY (calculated)
-0.800
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSERGDVA TAIRPAAADK LVHGPISDKK CRKKVPRKVH KSEREKLKRG HLNDLFGELG NMLEADRQSN GKACILTDTT RILRDLLSQV KSLRQENSTL
101: QNESNYVTME RNELQDENGA LRSEISDLQN ELRMRATGSP GWGHGATGSP LPVPPSPGTV FPSQQPMQPS PMTTSTVFPL QQPLPQPTVI EPSARQPLEL
201: KLFLEAPPAE DPEPSEDQEA PNNVARPQPR YPTEASSWPI SLGLPRMEDE QM
101: QNESNYVTME RNELQDENGA LRSEISDLQN ELRMRATGSP GWGHGATGSP LPVPPSPGTV FPSQQPMQPS PMTTSTVFPL QQPLPQPTVI EPSARQPLEL
201: KLFLEAPPAE DPEPSEDQEA PNNVARPQPR YPTEASSWPI SLGLPRMEDE QM
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.