Factsheet for Zm00001d029339_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017649_P001
Zm00001d018530_P001
Zm00001d029988_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT3G47640.1	Zm00001d018530_P001	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39270	Sorghum	nucleus	83.33	83.03
Os03t0379300-01	Rice	nucleus	62.59	67.06
TraesCS2B01G095900.1	Wheat	nucleus	62.22	62.22
TraesCS2A01G081300.1	Wheat	plastid	63.33	50.59
TraesCS2D01G079100.1	Wheat	plastid	60.37	49.54
Zm00001d022225_P001	Maize	nucleus	48.15	48.87
GSMUA_AchrUn_...	Banana	nucleus	34.44	43.87
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	61.85	42.49
CDY17794	Canola	cytosol	11.48	39.24
CDX86900	Canola	cytosol	8.89	35.82
KRH56921	Soybean	nucleus	28.52	34.68
Zm00001d048901_P002	Maize	nucleus	35.19	34.67
KRH03461	Soybean	nucleus	27.41	32.89
CDY21793	Canola	nucleus	26.3	30.47
Bra019509.1-P	Field mustard	nucleus	26.3	30.34
CDX77869	Canola	nucleus	25.93	30.04
AT3G47640.1	Thale cress	nucleus	26.3	29.58
CDX83022	Canola	nucleus	25.93	29.29
Solyc03g116340.2.1	Tomato	nucleus	25.19	28.22
PGSC0003DMT400001617	Potato	nucleus	24.81	27.8
VIT_17s0000g06000.t01	Wine grape	nucleus	26.3	27.73
CDY53423	Canola	nucleus	24.44	27.73
VIT_14s0108g00480.t01	Wine grape	plastid	32.22	26.52
GSMUA_Achr2P07390_001	Banana	nucleus	20.37	24.12
Bra033788.1-P	Field mustard	nucleus	17.78	10.93

Protein Annotations

EntrezGene:100282178	MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	UniProt:B8A2P8	EMBL:BT055840
EMBL:BT067737	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	EMBL:HQ858794	InterPro:IPR011598	InterPro:IPR036638	ProteinID:ONL98512.1	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF62	SUPFAM:SSF47459	UniParc:UPI00019177D2	EnsemblPlantsGene:Zm00001d029339	EnsemblPlants:Zm00001d029339_P001
EnsemblPlants:Zm00001d029339_T001	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

Transcription factor bHLH47

Coordinates

chr1:+:66569893..66572838

Molecular Weight (calculated)

29661.0 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.687

Length

270 amino acids

Sequence
(BLAST)

001: MVPSEMGSVA TAVSTPAADK LLHGPISGKK CKKPGPRKIH KAEREKLKRD HLNDLFVELG NMLEADRQNN GKACILTDTT RILRDLLVQV DSLRKEHSDL
101: QNESHYVTME RDEMQDENGV LRKEISELQN ELTMRVSGSP AGWGHGTARS DPPLPHSTAV FSSEQAMQPP TIASVVFPLQ QPLAPSAMTK PPHAAPPLEL
201: KLFPEVASAE GHEPCEDHKA PNHVARPQAR YPTQSASWPV NLFSGLPRME DEQCSSSTSG SSREDNTDIE

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.