Factsheet for HORVU2Hr1G013450.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G054930.3
HORVU6Hr1G066640.4
HORVU6Hr1G093960.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	HORVU1Hr1G054930.3	AT4G17680.1	21798944
AT3G47640.1	HORVU6Hr1G066640.4	AT4G17680.1	21798944
AT3G47640.1	HORVU6Hr1G093960.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G095900.1	Wheat	nucleus	54.71	79.63
TraesCS2A01G081300.1	Wheat	plastid	61.07	71.01
TraesCS2D01G079100.1	Wheat	plastid	57.0	68.09
Os03t0379300-01	Rice	nucleus	41.22	64.29
KXG39270	Sorghum	nucleus	44.02	63.84
Zm00001d029339_P001	Maize	nucleus	42.49	61.85
HORVU2Hr1G028530.3	Barley	cytosol, mitochondrion, nucleus	31.81	46.13
GSMUA_AchrUn_...	Banana	nucleus	22.9	42.45
CDY17794	Canola	cytosol	7.63	37.97
CDX86900	Canola	cytosol	6.11	35.82
KRH56921	Soybean	nucleus	19.85	35.14
KRH03461	Soybean	nucleus	20.1	35.11
Solyc03g116340.2.1	Tomato	nucleus	18.07	29.46
PGSC0003DMT400001617	Potato	nucleus	17.56	28.63
AT3G47640.1	Thale cress	nucleus	17.05	27.92
CDY21793	Canola	nucleus	16.29	27.47
Bra019509.1-P	Field mustard	nucleus	16.29	27.35
CDX77869	Canola	nucleus	16.03	27.04
VIT_14s0108g00480.t01	Wine grape	plastid	22.39	26.83
CDX83022	Canola	nucleus	16.29	26.78
VIT_17s0000g06000.t01	Wine grape	nucleus	17.3	26.56
CDY53423	Canola	nucleus	16.03	26.47
GSMUA_Achr2P07390_001	Banana	nucleus	12.47	21.49
Bra033788.1-P	Field mustard	nucleus	11.45	10.25

Protein Annotations

EnsemblPlants:HORVU2Hr1G013450.3	EnsemblPlantsGene:HORVU2Hr1G013450	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF62	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459	UniParc:UPI000B471CD4
UniProt:A0A287H4M8	MapMan:15.5.32	MapMan:25.4.1.4	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:29201388..29204611

Molecular Weight (calculated)

42201.9 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.531

Length

393 amino acids

Sequence
(BLAST)

001: RQAGARHGAA HAPSSPLSPR TRGLPYTTIA TARATERARH APPPPRFLLL LLLLHSPPSR EATSTALDGS KRPVFLRPVS VLGTRVASSA SGRRLLGFCR
101: SAADGSGVLG FYYVVLQTPG EQGMVAMLPA ARGDAAPATS AGAAEKLVHR GPGTDGKYKK KAPRMVHKAE REKHKRDLLN DLFSELGEML EADRQTNGKA
201: CILTDTTRIL RDLLSQLESL RQENSTLQNE SHYVTMERNE LQDENGVLRN EILELQNELT MRPAGNPGWG HATAGSPHAV SHPASTVFPS QQPPTIPSAV
301: FPLQQPLQQP TVMEPPPPRE LKLFPDAASD IECPEPSEDQ EAANHIARPL ARYPAQSASW PVSLGLPRME DEQCSSGATG SSKEGSSSAS SGD

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.