Factsheet for PGSC0003DMT400001617

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400008728
PGSC0003DMT400041764
PGSC0003DMT400042166
PGSC0003DMT400052841
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	PGSC0003DMT400008728	AT1G69690.1	21798944
AT3G47640.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT3G47640.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT3G47640.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT3G47640.1	PGSC0003DMT400042166	AT5G08330.1	21798944
AT3G47640.1	PGSC0003DMT400041764	AT5G65495.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116340.2.1	Tomato	nucleus	97.1	97.1
CDY17794	Canola	cytosol	15.77	48.1
KRH56921	Soybean	nucleus	43.98	47.75
KRH03461	Soybean	nucleus	44.4	47.56
VIT_17s0000g06000.t01	Wine grape	nucleus	45.23	42.58
CDX86900	Canola	cytosol	11.62	41.79
CDY21793	Canola	nucleus	35.68	36.91
CDX77869	Canola	nucleus	35.27	36.48
Bra019509.1-P	Field mustard	nucleus	35.27	36.32
AT3G47640.1	Thale cress	nucleus	36.1	36.25
CDX83022	Canola	nucleus	34.44	34.73
GSMUA_AchrUn_...	Banana	nucleus	29.88	33.96
CDY53423	Canola	nucleus	32.78	33.19
Os03t0379300-01	Rice	nucleus	31.12	29.76
Os07t0628500-01	Rice	nucleus	30.71	27.92
TraesCS4B01G125400.1	Wheat	nucleus	30.71	27.11
TraesCS2B01G183300.1	Wheat	nucleus	29.05	26.92
TraesCS2A01G157800.1	Wheat	nucleus	28.22	26.77
TraesCS2D01G163900.2	Wheat	nucleus	28.22	26.25
HORVU2Hr1G028530.3	Barley	cytosol, mitochondrion, nucleus	29.46	26.2
KXG28874	Sorghum	nucleus	29.88	25.99
Zm00001d022225_P001	Maize	nucleus	28.63	25.94
EER99751	Sorghum	nucleus	28.63	25.94
TraesCS2B01G095900.1	Wheat	nucleus	29.05	25.93
Zm00001d048901_P002	Maize	nucleus	29.46	25.91
Os11t0601700-01	Rice	nucleus	29.46	25.54
GSMUA_Achr3P20020_001	Banana	nucleus	33.2	25.0
Zm00001d029339_P001	Maize	nucleus	27.8	24.81
KXG39270	Sorghum	nucleus	27.8	24.72
Os08t0494375-00	Rice	nucleus	17.01	23.84
GSMUA_Achr2P07390_001	Banana	nucleus	20.75	21.93
TraesCS4A01G163300.1	Wheat	mitochondrion	19.92	20.96
TraesCS2A01G081300.1	Wheat	plastid	29.05	20.71
TraesCS2D01G079100.1	Wheat	plastid	28.22	20.67
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	28.63	17.56
Bra033788.1-P	Field mustard	nucleus	21.99	12.07

Protein Annotations

EntrezGene:102590170	MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	ProteinID:ABD93539	ProteinID:ABD93539.2
ncoils:Coil	EMBL:DQ423074	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0010106	GO:GO:0019725
GO:GO:0046983	GO:GO:0055072	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0ZIT3
EnsemblPlantsGene:PGSC0003DMG400000599	PGSC:PGSC0003DMG400000599	EnsemblPlants:PGSC0003DMT400001617	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF51
SUPFAM:SSF47459	UniParc:UPI000294EA29	RefSeq:XP_006364187.1	InterPro:bHLH_dom	SEG:seg	:

Description

DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000599]

Coordinates

chr3:+:56279966..56283979

Molecular Weight (calculated)

27194.2 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.756

Length

241 amino acids

Sequence
(BLAST)

001: MDTENPAPIV EKDATDAETS LDSSHLGKKI QKKVPKRIHK AEREKMKREH LNELFLGLAD ALELSEQMNG KASVLSEAAR FVKDMLSQIK HMRTENTTLL
101: SESQYLSVEK KELEDENTAL EAEISKLQTE VKAREAETSL DLNLAPPEIH HTEFASQTNY MRLPASEHAF QQSQMMNPVY VFPLSSNPQA YPAPDAADSM
201: AMPTSTVKKP QPRYPTPNDV WPSQILEKRP QLLRQEVQDG A

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.