Factsheet for TraesCS4B01G125400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6A01G412800.1
TraesCS6B01G289500.1
TraesCS6B01G462100.1
TraesCS6D01G243000.1
TraesCS6D01G397000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6D01G243000.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G163300.1	Wheat	mitochondrion	63.0	75.11
Os11t0601700-01	Rice	nucleus	58.61	57.55
KXG28874	Sorghum	nucleus	57.14	56.32
Zm00001d048901_P002	Maize	nucleus	53.85	53.65
GSMUA_AchrUn_...	Banana	nucleus	34.07	43.87
CDY17794	Canola	cytosol	10.62	36.71
TraesCS2B01G095900.1	Wheat	nucleus	35.9	36.3
CDX86900	Canola	cytosol	8.79	35.82
TraesCS2B01G183300.1	Wheat	nucleus	31.5	33.08
KRH03461	Soybean	nucleus	27.11	32.89
KRH56921	Soybean	nucleus	26.01	31.98
Solyc03g116340.2.1	Tomato	nucleus	27.47	31.12
PGSC0003DMT400001617	Potato	nucleus	27.11	30.71
AT3G47640.1	Thale cress	nucleus	24.91	28.33
CDY21793	Canola	nucleus	24.18	28.33
Bra019509.1-P	Field mustard	nucleus	24.18	28.21
VIT_17s0000g06000.t01	Wine grape	nucleus	26.37	28.12
CDX83022	Canola	nucleus	24.54	28.03
CDX77869	Canola	nucleus	23.44	27.47
GSMUA_Achr2P07390_001	Banana	nucleus	22.34	26.75
CDY53423	Canola	nucleus	23.08	26.47
VIT_14s0108g00480.t01	Wine grape	plastid	30.4	25.3
Bra033788.1-P	Field mustard	nucleus	16.85	10.48

Protein Annotations

EnsemblPlants:TraesCS4B01G125400.1	EnsemblPlantsGene:TraesCS4B01G125400	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF71	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:25.4.1.4	:	:	:

Description

No Description!

Coordinates

chr4B:+:155372794..155376107

Molecular Weight (calculated)

29828.7 Da

IEP (calculated)

8.511

GRAVY (calculated)

-0.829

Length

273 amino acids

Sequence
(BLAST)

001: MVADAQSSDS MAGRSSYAAE KHVDRCLDKR AQEKAPKKNH KAEREKLKRD QLNDLFVELS SMLDHDRQNR GKATVLGDAA RVLRDLTTQV ESLRKEQSTL
101: LTERQYVGSE KTELQDENTT LRAQVIELQN ELRARIGNSS LNLSSLVVSH PIGSSCTTNL ATHPTPHDTW SNVSNLSTMS MVAPTNTPSP LQNQQHHSVA
201: SGQVALRPQE LQLFPGTSAS SDRECSRHRS NPATSSLADS LPGQLRLSLP PTSQEESSGG GGAPGNRKER KTS

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.