Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0687500-01 | |
| Os02t0828566-01 | |
| Os03t0422702-00 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G47640.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os02t0828566-01 | AT5G08330.1 | 21798944 |
| AT3G47640.1 | Os03t0422702-00 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG28874 | Sorghum | nucleus | 59.35 | 59.57 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 57.55 | 58.61 |
| Zm00001d048901_P002 | Maize | nucleus | 54.68 | 55.47 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 39.93 | 48.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.86 | 39.15 |
| CDY17794 | Canola | cytosol | 10.43 | 36.71 |
| Os07t0628500-01 | Rice | nucleus | 34.17 | 35.85 |
| CDX86900 | Canola | cytosol | 8.63 | 35.82 |
| Os03t0379300-01 | Rice | nucleus | 32.01 | 35.32 |
| KRH03461 | Soybean | nucleus | 28.42 | 35.11 |
| KRH56921 | Soybean | nucleus | 27.7 | 34.68 |
| CDY21793 | Canola | nucleus | 25.18 | 30.04 |
| Bra019509.1-P | Field mustard | nucleus | 25.18 | 29.91 |
| Solyc03g116340.2.1 | Tomato | nucleus | 25.9 | 29.88 |
| CDX83022 | Canola | nucleus | 25.54 | 29.71 |
| Os08t0494375-00 | Rice | nucleus | 18.35 | 29.65 |
| PGSC0003DMT400001617 | Potato | nucleus | 25.54 | 29.46 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 26.98 | 29.3 |
| CDX77869 | Canola | nucleus | 24.46 | 29.18 |
| AT3G47640.1 | Thale cress | nucleus | 25.18 | 29.17 |
| CDY53423 | Canola | nucleus | 24.1 | 28.15 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 29.5 | 25.0 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 19.42 | 23.68 |
| Bra033788.1-P | Field mustard | nucleus | 17.63 | 11.16 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.4 | Gene3D:4.10.280.10 | EntrezGene:4350864 | ProteinID:ABA94591.1 | ProteinID:BAF28591.1 |
| ProteinID:BAT14758.1 | ncoils:Coil | ProteinID:EEE52365.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os11g0601700 | EnsemblPlants:Os11t0601700-01 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF71 | UniProt:Q2R1K8 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0000681EFD | RefSeq:XP_015617819.1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
basic helix-loop-helix protein 061Helix-loop-helix DNA-binding domain containing protein. (Os11t0601700-01)
Coordinates
chr11:-:23132812..23137537
Molecular Weight (calculated)
30073.0 Da
IEP (calculated)
8.517
GRAVY (calculated)
-0.842
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQVRNQNLG MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH KAEREKLKRD QLNDLFVELS SMLDPERQNS GKATVLGDAA RVLRDLVSQV
101: ESLRKEQSAL LTERQYVGSE NNELQEENIM LRAQILELHN EICARMGNNH LNQSNLAMSQ PVANNGSNSA TQPVPHHIWG NGPNLAMVHP TNTLSPLHNQ
201: HHQSAGASQV YASRPQELQL FPGTSVSTER ERSRAGSGST PATSSGLTDS LPGQLRLSLP QSSQEENSSG SKKGRKKG
101: ESLRKEQSAL LTERQYVGSE NNELQEENIM LRAQILELHN EICARMGNNH LNQSNLAMSQ PVANNGSNSA TQPVPHHIWG NGPNLAMVHP TNTLSPLHNQ
201: HHQSAGASQV YASRPQELQL FPGTSVSTER ERSRAGSGST PATSSGLTDS LPGQLRLSLP QSSQEENSSG SKKGRKKG
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.