Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P07390_001 | Banana | nucleus | 38.21 | 35.53 |
| Os03t0379300-01 | Rice | nucleus | 41.51 | 34.92 |
| Zm00001d022225_P001 | Maize | nucleus | 43.4 | 34.59 |
| Zm00001d029339_P001 | Maize | nucleus | 43.87 | 34.44 |
| CDX86900 | Canola | cytosol | 10.85 | 34.33 |
| EER99751 | Sorghum | nucleus | 42.92 | 34.21 |
| CDY17794 | Canola | cytosol | 12.74 | 34.18 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 43.87 | 34.07 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 41.51 | 33.85 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 42.92 | 33.7 |
| KXG39270 | Sorghum | nucleus | 42.45 | 33.21 |
| Os07t0628500-01 | Rice | nucleus | 41.51 | 33.21 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 40.57 | 33.2 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 39.62 | 33.07 |
| KRH56921 | Soybean | nucleus | 34.43 | 32.88 |
| KRH03461 | Soybean | nucleus | 34.43 | 32.44 |
| Zm00001d048901_P002 | Maize | nucleus | 41.51 | 32.12 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 33.96 | 31.44 |
| KXG28874 | Sorghum | nucleus | 41.04 | 31.41 |
| CDY53423 | Canola | nucleus | 34.43 | 30.67 |
| CDX83022 | Canola | nucleus | 34.43 | 30.54 |
| AT3G47640.1 | Thale cress | nucleus | 33.96 | 30.0 |
| GSMUA_Achr3P20020_001 | Banana | nucleus | 45.28 | 30.0 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 38.21 | 29.89 |
| Solyc03g116340.2.1 | Tomato | nucleus | 33.96 | 29.88 |
| PGSC0003DMT400001617 | Potato | nucleus | 33.96 | 29.88 |
| Os11t0601700-01 | Rice | nucleus | 39.15 | 29.86 |
| Bra019509.1-P | Field mustard | nucleus | 32.55 | 29.49 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 35.38 | 29.3 |
| CDY21793 | Canola | nucleus | 32.08 | 29.18 |
| Os08t0494375-00 | Rice | nucleus | 23.58 | 29.07 |
| CDX77869 | Canola | nucleus | 31.6 | 28.76 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 44.34 | 28.66 |
| TraesCS2D01G079100.1 | Wheat | plastid | 42.45 | 27.36 |
| TraesCS2A01G081300.1 | Wheat | plastid | 42.45 | 26.63 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 42.45 | 22.9 |
| Bra033788.1-P | Field mustard | nucleus | 25.94 | 12.53 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP12770_001 | EnsemblPlants:GSMUA_AchrUn_randomT12770_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG12770_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000296CFC4 | UniProt:M0U8N6 | MapMan:15.5.32 | MapMan:25.4.1.4 | : |
Description
Putative helix-loop-helix DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12770_001]
Coordinates
chrchrUn_random:+:61441878..61444296
Molecular Weight (calculated)
23663.0 Da
IEP (calculated)
5.770
GRAVY (calculated)
-0.623
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKAEREKLK RDQLNELFLE LGHVLEPDRQ NNCKASILGD TTRVLRDLFA QVETLRKENA ALLTESRYVT VERNELKDEN NALQAEISQL QTELQGRSLS
101: VTMWNNNTNS SSFTQPQPTA TVLPMQQQPI IIGSVQANPV RELQLFPVER ITTPPSTPPA PPSQVTRPHA RYPAPLDLWP GQLLSTLPRT SQEEICGSSS
201: ISTGSKEGSD KV
101: VTMWNNNTNS SSFTQPQPTA TVLPMQQQPI IIGSVQANPV RELQLFPVER ITTPPSTPPA PPSQVTRPHA RYPAPLDLWP GQLLSTLPRT SQEEICGSSS
201: ISTGSKEGSD KV
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.