Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra003986.1-P | |
| Bra004407.1-P | |
| Bra007875.1-P | |
| Bra012650.1-P | |
| Bra024392.1-P | |
| Bra028662.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21793 | Canola | nucleus | 99.15 | 99.57 |
| CDX77869 | Canola | nucleus | 96.58 | 97.0 |
| AT3G47640.1 | Thale cress | nucleus | 82.48 | 80.42 |
| KRH03461 | Soybean | nucleus | 42.31 | 44.0 |
| KRH56921 | Soybean | nucleus | 41.45 | 43.69 |
| Solyc03g116340.2.1 | Tomato | nucleus | 37.18 | 36.1 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 39.32 | 35.94 |
| PGSC0003DMT400001617 | Potato | nucleus | 36.32 | 35.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.49 | 32.55 |
| Os03t0379300-01 | Rice | nucleus | 31.2 | 28.97 |
| Bra033788.1-P | Field mustard | nucleus | 52.56 | 28.02 |
| Zm00001d048901_P002 | Maize | nucleus | 31.62 | 27.01 |
| Zm00001d029339_P001 | Maize | nucleus | 30.34 | 26.3 |
| Os07t0628500-01 | Rice | nucleus | 29.49 | 26.04 |
| KXG28874 | Sorghum | nucleus | 30.77 | 25.99 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 28.63 | 25.87 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 27.78 | 25.59 |
| EER99751 | Sorghum | nucleus | 29.06 | 25.56 |
| Zm00001d022225_P001 | Maize | nucleus | 29.06 | 25.56 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 28.21 | 25.38 |
| Os11t0601700-01 | Rice | nucleus | 29.91 | 25.18 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 28.63 | 24.81 |
| KXG39270 | Sorghum | nucleus | 28.63 | 24.72 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 28.21 | 24.18 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 27.35 | 23.62 |
| GSMUA_Achr3P20020_001 | Banana | nucleus | 32.05 | 23.44 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 21.37 | 21.83 |
| Os08t0494375-00 | Rice | nucleus | 15.38 | 20.93 |
| TraesCS2D01G079100.1 | Wheat | plastid | 28.63 | 20.36 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 19.23 | 19.74 |
| TraesCS2A01G081300.1 | Wheat | plastid | 28.21 | 19.53 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 27.35 | 16.29 |
Protein Annotations
| EnsemblPlants:Bra019509.1 | EnsemblPlants:Bra019509.1-P | EnsemblPlantsGene:Bra019509 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 |
| UniParc:UPI000253F084 | UniProt:M4DSL6 | MapMan:15.5.32 | MapMan:25.4.1.4 | : | : |
Description
AT3G47640 (E=3e-090) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA06:-:12706434..12707457
Molecular Weight (calculated)
26063.4 Da
IEP (calculated)
6.919
GRAVY (calculated)
-0.744
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKTPSTST HEANASVDER SRKGKVPKRI NKAVRERLKR EHLNELFIEL ADSLELNQQN SGKASVLCEA TRFLKDVFGE IESLRKEHAS LLSESNYVTT
101: EKNELKEETS VLETEISRLQ SEIEARVNQS KPDLNTSPAP EYHHHHHHHY QQHAELASQF SGLPIFQGAA GFQQSSAATP PGATVVVLPM QPDLQTQAPL
201: MYNSSNVSKP CPRYASAADS WPSRLLGERL KANE
101: EKNELKEETS VLETEISRLQ SEIEARVNQS KPDLNTSPAP EYHHHHHHHY QQHAELASQF SGLPIFQGAA GFQQSSAATP PGATVVVLPM QPDLQTQAPL
201: MYNSSNVSKP CPRYASAADS WPSRLLGERL KANE
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.