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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • cytosol 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G69690.1 Bra032421.1-P AT1G06450.1 21798944
AT1G69690.1 Bra012471.1-P AT1G25550.1 21798944
AT1G69690.1 Bra010881.1-P AT1G28360.1 21798944
AT1G69690.1 Bra030094.1-P AT1G28360.1 21798944
AT1G69690.1 Bra032898.1-P AT1G28360.1 21798944
AT1G69690.1 Bra018774.1-P AT1G49030.1 21798944
AT1G69690.1 Bra018956.1-P AT1G52240.1 21798944
AT1G69690.1 Bra030396.1-P AT1G52240.1 21798944
AT1G69690.1 Bra032056.1-P AT2G24860.1 21798944
AT1G69690.1 Bra018343.1-P AT2G30050.1 21798944
AT1G69690.1 Bra021603.1-P AT2G30050.1 21798944
AT1G69690.1 Bra022774.1-P AT2G30050.1 21798944
AT1G69690.1 Bra021765.1-P AT2G31985.1 21798944
AT1G69690.1 Bra004644.1-P AT2G41730.1 21798944
AT1G69690.1 Bra004645.1-P AT2G41730.1 21798944
AT1G69690.1 Bra040595.1-P AT4G14980.1 21798944
AT1G69690.1 Bra013635.1-P AT4G22720.1 21798944
AT1G69690.1 Bra020834.1-P AT4G22720.1 21798944
AT1G69690.1 Bra013844.1-P AT4G24900.1 21798944
AT1G69690.1 Bra010501.1-P AT4G36110.1 21798944
AT1G69690.1 Bra011662.1-P AT4G36110.1 21798944
AT1G69690.1 Bra017747.1-P AT4G36110.1 21798944
AT1G69690.1 Bra025431.1-P AT5G38420.1 21798944
AT1G69690.1 Bra028174.1-P AT5G38420.1 21798944
AT1G69690.1 Bra028181.1-P AT5G38420.1 21798944
AT1G69690.1 Bra028406.1-P AT5G38420.1 21798944
AT1G69690.1 Bra020704.1-P AT5G48385.1 21798944
AT1G69690.1 Bra036176.1-P AT5G48385.1 21798944
AT1G69690.1 Bra037488.1-P AT5G48385.1 21798944
AT1G69690.1 Bra037489.1-P AT5G48385.1 21798944
AT1G69690.1 Bra000626.1-P AT5G50600.1 21798944
AT1G69690.1 Bra022523.1-P AT5G50600.1 21798944
AT1G69690.1 Bra000626.1-P AT5G50700.1 21798944
AT1G69690.1 Bra022523.1-P AT5G50700.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68276 Canola nucleus, plastid 100.0 100.0
CDY01754 Canola nucleus, plastid 97.51 96.9
Bra003986.1-P Field mustard cytosol 69.16 90.61
Bra007875.1-P Field mustard cytosol 67.6 88.21
AT1G69690.1 Thale cress nucleus, plastid 86.6 85.54
VIT_01s0026g02200.t01 Wine grape nucleus 50.16 45.61
KRH45889 Soybean nucleus 38.32 43.01
KRG99108 Soybean nucleus 35.83 42.12
Bra026506.1-P Field mustard cytosol, mitochondrion, nucleus 23.36 34.72
Bra029366.1-P Field mustard cytosol 18.38 33.52
PGSC0003DMT400008728 Potato nucleus 38.63 33.42
Bra028662.1-P Field mustard nucleus 23.68 33.19
Solyc05g007420.1.1 Tomato nucleus 39.56 33.16
Bra025528.1-P Field mustard nucleus 23.05 33.04
Bra009338.1-P Field mustard nucleus 23.99 32.63
Bra018126.1-P Field mustard nucleus 47.04 32.4
Bra005984.1-P Field mustard nucleus 23.36 32.05
Bra009667.1-P Field mustard nucleus 24.61 31.6
Bra039096.1-P Field mustard nucleus 26.17 30.22
Bra025244.1-P Field mustard nucleus 28.66 29.97
Bra000395.1-P Field mustard nucleus 26.17 27.01
Bra016090.1-P Field mustard nucleus 29.91 26.97
Bra027886.1-P Field mustard nucleus, plastid 33.02 26.9
Bra022568.1-P Field mustard cytosol 24.61 26.6
Bra004929.1-P Field mustard nucleus 26.17 25.93
Bra008001.1-P Field mustard nucleus, plastid 29.28 25.13
Protein Annotations
MapMan:15.5.19EnsemblPlantsGene:Bra004407EnsemblPlants:Bra004407.1EnsemblPlants:Bra004407.1-PGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987InterPro:IPR017887UniProt:M4CJM3PFAM:PF03634PFscan:PS51369PANTHER:PTHR31072
PANTHER:PTHR31072:SF40InterPro:TF_TCP_subgrInterPro:Transcription_factor_TCPUniParc:UPI0001B3427DSEG:seg:
Description
AT1G69690 (E=2e-098) | TCP family transcription factor, putative
Coordinates
chrA07:+:18497886..18498851
Molecular Weight (calculated)
34068.0 Da
IEP (calculated)
7.465
GRAVY (calculated)
-0.733
Length
321 amino acids
Sequence
(BLAST)
001: MDPDPDHHQR PNFPLQLLDS SSSSSTSLAI IPSASSSEPN SDPNVLSKKP PPKRTSTKDR HTKVEGRGRR IRMPAMCAAR VFQLTRELGH KSDGETIEWL
101: LQQAEPAVIA ATGTGTIPAN FTSLNISLRS SRSSLSAAHL RTTPSNYYFH SPAMAQHHHQ QQLHQVRPKN ESDSCSSSQL VDHNQMGNYL VQSTAGSLPT
201: SQTPATAPFW SSGDNTQNLW AFHHSGDVYN TSSGGGGGGG GAGGGGGVHL MNFPAPFALF SGQPLASGYG GGGGGGGEHN HYGVLSALNA AYRPVQETAN
301: QQNHGDHHHN HQEDGSTSHH S
Best Arabidopsis Sequence Match ( AT1G69690.1 )
(BLAST)
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.