Factsheet for VIT_01s0026g02200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s2082g00010.t01
VIT_01s0011g03110.t01
VIT_04s0008g06970.t01
VIT_04s0023g03230.t01
VIT_05s0062g00810.t01
VIT_07s0151g00650.t01
VIT_10s0003g00130.t01
VIT_13s0106g00770.t01
VIT_14s0006g03190.t01
VIT_14s0066g02380.t01
VIT_17s0000g01050.t01
VIT_17s0000g01350.t01
VIT_17s0000g03690.t01
VIT_17s0000g03960.t01
VIT_19s0015g00810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69690.1	VIT_01s0011g03110.t01	AT1G25550.1	21798944
AT1G69690.1	VIT_10s0003g00130.t01	AT1G28360.1	21798944
AT1G69690.1	VIT_14s0006g03190.t01	AT1G49030.1	21798944
AT1G69690.1	VIT_17s0000g03960.t01	AT1G49030.1	21798944
AT1G69690.1	VIT_04s0008g06970.t01	AT2G24860.1	21798944
AT1G69690.1	VIT_13s0106g00770.t01	AT2G30050.1	21798944
AT1G69690.1	VIT_14s0066g02380.t01	AT2G30050.1	21798944
AT1G69690.1	VIT_19s0015g00810.t01	AT2G30050.1	21798944
AT1G69690.1	VIT_05s0062g00810.t01	AT2G31985.1	21798944
AT1G69690.1	VIT_00s2082g00010.t01	AT4G22720.1	21798944
AT1G69690.1	VIT_17s0000g01350.t01	AT4G24900.1	21798944
AT1G69690.1	VIT_04s0023g03230.t01	AT4G36110.1	21798944
AT1G69690.1	VIT_17s0000g03690.t01	AT5G38420.1	21798944
AT1G69690.1	VIT_07s0151g00650.t01	AT5G48385.1	21798944
AT1G69690.1	VIT_17s0000g01050.t01	AT5G50600.1	21798944
AT1G69690.1	VIT_17s0000g01050.t01	AT5G50700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06020.t01	Wine grape	nucleus	66.86	64.13
AT1G69690.1	Thale cress	nucleus, plastid	47.03	51.08
CDY28576	Canola	nucleus	45.61	50.63
CDY28577	Canola	cytosol	34.84	50.62
Bra003986.1-P	Field mustard	cytosol	35.13	50.61
Bra004407.1-P	Field mustard	nucleus, plastid	45.61	50.16
CDY68276	Canola	nucleus, plastid	45.61	50.16
Bra007875.1-P	Field mustard	cytosol	34.84	50.0
CDY01754	Canola	nucleus, plastid	45.61	49.85
KRH74835	Soybean	nucleus	52.69	48.31
KRH70699	Soybean	nucleus	57.51	47.88
KRH49755	Soybean	nucleus	26.06	46.46
PGSC0003DMT400008728	Potato	nucleus	42.49	40.43
Solyc05g007420.1.1	Tomato	nucleus	42.78	39.43
VIT_16s0022g02480.t01	Wine grape	nucleus	17.56	36.69
VIT_10s0042g00170.t01	Wine grape	nucleus	25.21	34.9
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	19.83	34.31
VIT_14s0068g01690.t01	Wine grape	nucleus	27.2	32.43
VIT_18s0117g00340.t01	Wine grape	nucleus	29.46	29.3
VIT_15s0048g01150.t01	Wine grape	nucleus	25.5	26.55
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	32.86	25.22
VIT_02s0025g04590.t01	Wine grape	nucleus	25.78	22.14

Protein Annotations

EntrezGene:100260247	wikigene:100260247	MapMan:15.5.19	ProteinID:CCB56558	ProteinID:CCB56558.1	UniProt:F6HPD0
EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EntrezGene:LOC100260247
wikigene:LOC100260247	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF40	TIGR:TC54944
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001982ABA	ArrayExpress:VIT_01s0026g02200	EnsemblPlantsGene:VIT_01s0026g02200	EnsemblPlants:VIT_01s0026g02200.t01
unigene:Vvi.15334	RefSeq:XP_002274048	RefSeq:XP_002274048.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:11610155..11611375

Molecular Weight (calculated)

38056.6 Da

IEP (calculated)

9.141

GRAVY (calculated)

-0.627

Length

353 amino acids

Sequence
(BLAST)

001: MEGENGIRRP NFPLQLLEKN KDEVASTASN SGPQISEPPK KPPPKRTSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAV
101: IAATGTGTIP ANFTSLNISL RSSGSSMSAP SHLRTSYYNP NFARNRTEWE RNIDESLRRI VLPGVGLSSE NSSSTLLNFS SSSVNAMLQA KPELRETCLD
201: VSDAEATIGR KRQPEQDPSH SQMGNYLLQS GSGSIPSTHS QIPTTFWMVT NPSNQVMSGD PVWTFPSVNN SSMYRGTMSS GLHFMNFPTP MALLPGQQLG
301: SGIGGSGGVA DGHLGMLAAL NAFRPLPGNG APDSQQTASH PHNGGDHRHD TTS

Best Arabidopsis Sequence Match ( AT3G47620.1 )
(BLAST)

001: MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD

Arabidopsis Description

TCP14Transcription factor TCP14 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.