Factsheet for VIT_18s0117g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	49.01	37.83
VIT_14s0068g01690.t01	Wine grape	nucleus	28.73	34.46
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	19.44	33.82
PGSC0003DMT400064164	Potato	nucleus	50.14	33.33
VIT_16s0022g02480.t01	Wine grape	nucleus	15.77	33.14
Solyc01g103780.2.1	Tomato	nucleus	40.85	32.58
VIT_10s0042g00170.t01	Wine grape	nucleus	22.82	31.76
VIT_17s0000g06020.t01	Wine grape	nucleus	31.27	30.16
VIT_01s0026g02200.t01	Wine grape	nucleus	29.3	29.46
VIT_15s0048g01150.t01	Wine grape	nucleus	25.07	26.25
CDX72856	Canola	nucleus	24.23	25.75
GSMUA_Achr6P17840_001	Banana	cytosol	27.89	25.52
CDX96370	Canola	nucleus	23.66	25.07
CDX82193	Canola	nucleus, plastid	24.79	25.0
CDY03666	Canola	nucleus, plastid	24.79	24.79
AT1G72010.1	Thale cress	nucleus, plastid	25.35	24.0
Bra016090.1-P	Field mustard	nucleus	23.94	23.88
GSMUA_Achr10P...	Banana	nucleus	26.76	23.51
Bra008001.1-P	Field mustard	nucleus, plastid	24.51	23.26
VIT_02s0025g04590.t01	Wine grape	nucleus	22.54	19.46

Protein Annotations

EntrezGene:100266605	wikigene:100266605	MapMan:15.5.19	ProteinID:CCB45111	ProteinID:CCB45111.1	UniProt:F6GYS5
EMBL:FN594973	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EntrezGene:LOC100266605
wikigene:LOC100266605	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI000198569D	ArrayExpress:VIT_18s0117g00340	EnsemblPlantsGene:VIT_18s0117g00340	EnsemblPlants:VIT_18s0117g00340.t01	unigene:Vvi.2128
RefSeq:XP_002272228	RefSeq:XP_002272228.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:23608849..23610082

Molecular Weight (calculated)

37108.9 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.555

Length

355 amino acids

Sequence
(BLAST)

001: MESLNNNRSG QSQEEASLNL VTPFQSQSQQ LGHGSDDPDP DRHGPYMGSI SIQPTASTSS KPASSSVKRS TKDRHTKVDG RGRRIRMPAI CAARVFQLTR
101: ELGHKSDGET IEWLLQQAEP AIVAATGTGT IPANFSTLNV SLRSSGSTIS APPSKSAPHS FHGGLGLFDD GGGDPSRRIL GFHHQLYPHL GTGGATSSSL
201: TKPAAPGPQD HEQGSSPAAT HCSARPAPAM WAVAPATSNG GSAFWMLPVT TSVSTSTAGV GASEPQIWPF ATGGGQYRVN FSGGVSPIQL GPMVLQQPQG
301: SQQLGLGLSD INMGMLNAYN SSRVDLGMNL EQHQHQNQPP QGSEDSGDED AAESQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.