Factsheet for PGSC0003DMT400064164

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103780.2.1	Tomato	nucleus	75.09	90.11
KRH06094	Soybean	plastid	44.01	65.1
KRH26343	Soybean	nucleus, plastid	48.5	59.68
VIT_18s0117g00340.t01	Wine grape	nucleus	33.33	50.14
PGSC0003DMT400067150	Potato	nucleus, plastid	30.15	49.24
PGSC0003DMT400023981	Potato	nucleus	32.96	45.24
HORVU5Hr1G035980.1	Barley	cytosol	30.71	43.04
Os12t0173300-00	Rice	nucleus	32.96	42.11
Zm00001d023565_P001	Maize	nucleus	30.34	40.0
Os11t0175700-00	Rice	nucleus, plastid	30.15	39.66
TraesCS5A01G121800.1	Wheat	nucleus	31.09	39.62
HORVU4Hr1G019380.1	Barley	nucleus, plastid	28.46	39.58
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	28.65	39.53
TraesCS4D01G090500.1	Wheat	nucleus, plastid	28.09	38.96
TraesCS4B01G093700.1	Wheat	nucleus, plastid	27.72	38.85
TraesCS4A01G222700.1	Wheat	nucleus, plastid	27.9	38.7
Zm00001d041866_P001	Maize	nucleus	29.96	38.46
PGSC0003DMT400052203	Potato	nucleus	16.67	38.36
TraesCS5B01G117100.1	Wheat	nucleus	29.59	37.89
PGSC0003DMT400090661	Potato	nucleus	18.35	35.13
PGSC0003DMT400055541	Potato	plastid	13.11	34.83
Zm00001d004791_P001	Maize	mitochondrion, nucleus	13.3	34.63
PGSC0003DMT400008728	Potato	nucleus	23.78	34.23
PGSC0003DMT400083148	Potato	nucleus	25.09	32.68
PGSC0003DMT400001613	Potato	nucleus	24.72	31.88
CDX72856	Canola	nucleus	19.85	31.74
GSMUA_Achr6P17840_001	Banana	cytosol	22.66	31.19
CDX96370	Canola	nucleus	19.1	30.45
GSMUA_Achr10P...	Banana	nucleus	23.03	30.45
Bra016090.1-P	Field mustard	nucleus	19.66	29.49
CDY03666	Canola	nucleus, plastid	19.48	29.3
CDX82193	Canola	nucleus, plastid	19.29	29.26
AT1G72010.1	Thale cress	nucleus, plastid	20.41	29.07
PGSC0003DMT400094424	Potato	cytosol	12.92	28.16
Bra008001.1-P	Field mustard	nucleus, plastid	19.66	28.07
PGSC0003DMT400088049	Potato	cytosol	13.48	26.67
PGSC0003DMT400062327	Potato	nucleus	17.98	26.23
PGSC0003DMT400042166	Potato	cytosol	18.73	22.32
PGSC0003DMT400095626	Potato	plastid	11.05	21.07
PGSC0003DMT400058534	Potato	nucleus	14.61	20.86

Protein Annotations

EntrezGene:102597862	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M1CBU2	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400024928	PGSC:PGSC0003DMG400024928	EnsemblPlants:PGSC0003DMT400064164	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF64	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000295954F	RefSeq:XP_006349348.1
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024928]

Coordinates

chr1:-:80466353..80468752

Molecular Weight (calculated)

57557.6 Da

IEP (calculated)

7.432

GRAVY (calculated)

-0.838

Length

534 amino acids

Sequence
(BLAST)

001: MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQHQHQYQL LSQHHHHQQQ LQQQHGRASV PFMTSISIQP SAQAPITNSA SPTATSASPS TSSPTPPQQQ
101: LVDASLAIAT RSDSLVDPNK KSQPQQQLAI QQTQHVQQQL QPPPKRQTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG HKSDGETIEW LLQQAEPAII
201: AATGTGTIPA NFSTLNISLR SSGSTLSAPP SKSAPHSFHS ALALAAAHHT PHPFEEGFSH MLGFHHNTHL LTQNPIADSI PGGSGGGDGT GGGEGADNYL
301: RKRYREDLFK EEGSSNQQGE ASGGSSSPSN KQFKGNSSQL PNKPNSQEGV AGQSSNMLRH TNMMPATGLW AVAPPPTSGT TGSPFWMLPV TASGSGQTLS
401: APMASTSGTA TLESQMWPFP MGSSNTIQAP LHFMPRFNIP PNLEFQSGRG NPLQLGSMLM QQQQQPSQHL GLGMSETNLG MLAALNAYSR GGLNMNSDHQ
501: QSHSLDHHQQ QQQHQQQHQP QPTDSDEDDP NNSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.