Factsheet for TraesCS5B01G117100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G175500.1
TraesCS2B01G201800.1
TraesCS2D01G182800.1
TraesCS4A01G222700.1	nucleus
TraesCS4B01G093700.1	nucleus
TraesCS4D01G090500.1	nucleus
TraesCS5A01G121800.1	nucleus
TraesCS5B01G117100.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	TraesCS4A01G222700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4B01G093700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4D01G090500.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5A01G121800.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5B01G117100.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4A01G222700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4B01G093700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4D01G090500.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5A01G121800.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5B01G117100.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS2A01G175500.1	AT5G60960.1	21297037
AT1G58100.1	TraesCS2B01G201800.1	AT5G60960.1	21297037
AT1G58100.1	TraesCS2D01G182800.1	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G121800.1	Wheat	nucleus	95.68	95.23
HORVU5Hr1G035980.1	Barley	cytosol	84.89	92.91
Os12t0173300-00	Rice	nucleus	67.39	67.22
Zm00001d023565_P001	Maize	nucleus	64.27	66.17
Zm00001d041866_P001	Maize	nucleus	62.11	62.26
TraesCS4B01G093700.1	Wheat	nucleus, plastid	45.32	49.61
CDY71135	Canola	nucleus	38.13	40.56
KRH06094	Soybean	plastid	34.29	39.61
CDY39914	Canola	nucleus, plastid	37.41	39.59
AT1G58100.1	Thale cress	nucleus	37.65	39.15
Bra027886.1-P	Field mustard	nucleus, plastid	36.93	39.09
TraesCS6B01G262600.1	Wheat	plastid	17.51	36.68
TraesCS2B01G062900.1	Wheat	plastid	12.95	33.75
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	37.17	33.7
TraesCS6B01G462100.1	Wheat	mitochondrion	14.39	30.3
Solyc01g103780.2.1	Tomato	nucleus	31.65	29.66
PGSC0003DMT400064164	Potato	nucleus	37.89	29.59
TraesCS2B01G392900.1	Wheat	cytosol	17.51	29.08
TraesCS7B01G091900.1	Wheat	cytosol, nucleus, peroxisome	25.9	29.03
TraesCS6B01G334900.1	Wheat	nucleus	26.62	27.61
GSMUA_Achr6P17840_001	Banana	cytosol	25.66	27.58
GSMUA_Achr10P...	Banana	nucleus	25.66	26.49
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	20.62	24.64
TraesCS3B01G470700.1	Wheat	nucleus	20.38	24.36
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	18.23	22.42

Protein Annotations

EnsemblPlants:TraesCS5B01G117100.1	EnsemblPlantsGene:TraesCS5B01G117100	InterPro:IPR017887	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	ncoils:Coil
PANTHER:PTHR31072	PANTHER:PTHR31072:SF36	PFAM:PF03634	PFscan:PS51369	SEG:seg	MapMan:15.5.19

Description

No Description!

Coordinates

chr5B:-:206101485..206102738

Molecular Weight (calculated)

43307.6 Da

IEP (calculated)

6.015

GRAVY (calculated)

-0.838

Length

417 amino acids

Sequence
(BLAST)

001: MDHGGGSGGG GSGGGGGGGG GAPSSSNSGG GSAGGTSGSR GGGSDHHPHH PFYYAGPAEP NNVQQQPQPQ RFIGSLAITP VVTDQAPASS AEKKAVAPVT
101: PSAGALAKRP SKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AILAATGTGT IPANFSSLNI SRAASGTTRP APFPALALHP
201: HHHHHQSPHP QHDMSTMLGY NHLLPPPQEP PQDANSPGSF MRKRYREDLF KEDDERHDPN APKAREQQVA PPAAMWAVAP NSAAPGGAFW MLPVSASQAA
301: TARPTEQPMW SFGGGGGSST VQAPLQFMST RVNYPSSGGA MGGMPDTSIG MLAGLNAYDR GVGGTEEEQQ QQQQQEQDQQ QEMEQQRDGS GGGNEGEEDG
401: DDDSGGEEEG HGNNSSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.