CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01754	nucleus
CDY28576	nucleus
CDY28577	nucleus
CDY39914	nucleus
CDY68276	nucleus
CDY71135	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	CDY39914	AT1G58100.1	23760157
AT1G58100.1	CDY71135	AT1G58100.1	23760157
AT1G58100.1	CDY39914	AT1G58100.1	23760157
AT1G58100.1	CDY71135	AT1G58100.1	23760157
AT1G58100.1	CDY01754	AT1G69690.1	23760157
AT1G58100.1	CDY28576	AT1G69690.1	23760157
AT1G58100.1	CDY28577	AT1G69690.1	23760157
AT1G58100.1	CDY68276	AT1G69690.1	23760157

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027886.1-P	Field mustard	nucleus, plastid	98.98	98.98
CDY71135	Canola	nucleus	96.95	97.45
AT1G58100.1	Thale cress	nucleus	80.2	78.8
KRH06094	Soybean	plastid	39.09	42.66
HORVU5Hr1G035980.1	Barley	cytosol	40.86	42.26
CDY40752	Canola	cytosol	18.78	41.81
CDX81094	Canola	nucleus	19.04	41.67
CDX78335	Canola	nucleus	18.27	40.91
CDY36943	Canola	nucleus	19.54	40.74
Os12t0173300-00	Rice	nucleus	42.64	40.19
CDX87179	Canola	nucleus	21.83	40.0
TraesCS4B01G093700.1	Wheat	nucleus, plastid	38.07	39.37
TraesCS4A01G222700.1	Wheat	nucleus, plastid	38.32	39.22
TraesCS4D01G090500.1	Wheat	nucleus, plastid	38.32	39.22
CDY16842	Canola	nucleus	21.32	39.07
HORVU4Hr1G019380.1	Barley	nucleus, plastid	37.56	38.54
Zm00001d023565_P001	Maize	nucleus	39.59	38.52
TraesCS5A01G121800.1	Wheat	nucleus	40.86	38.42
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	37.56	38.24
Zm00001d041866_P001	Maize	nucleus	39.59	37.5
TraesCS5B01G117100.1	Wheat	nucleus	39.59	37.41
CDY44770	Canola	cytosol	21.07	36.89
Os11t0175700-00	Rice	nucleus, plastid	36.8	35.71
CDY45760	Canola	nucleus	21.83	35.54
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	40.86	35.0
CDY28577	Canola	cytosol	21.57	34.98
CDY46951	Canola	nucleus	20.3	34.78
CDX88010	Canola	nucleus	22.08	34.39
CDY21536	Canola	nucleus	20.56	34.32
CDY28576	Canola	nucleus	27.66	34.28
CDY40799	Canola	nucleus	19.8	33.91
Zm00001d004791_P001	Maize	mitochondrion, nucleus	17.26	33.17
CDY01754	Canola	nucleus, plastid	27.16	33.13
CDY68276	Canola	nucleus, plastid	26.9	33.02
CDY24170	Canola	nucleus	20.3	32.92
CDY60249	Canola	cytosol	16.5	31.25
CDY20065	Canola	cytosol	20.05	29.37
CDY48964	Canola	nucleus	16.24	29.09
CDY52403	Canola	nucleus	21.83	28.2
CDY00171	Canola	nucleus	19.54	27.9
CDY13675	Canola	nucleus	21.83	27.65
CDX72856	Canola	nucleus	23.1	27.25
CDY27099	Canola	nucleus	19.29	27.24
CDX95656	Canola	nucleus	20.05	26.96
CDX91612	Canola	nucleus	19.54	26.74
CDY53888	Canola	nucleus	20.81	26.37
GSMUA_Achr6P17840_001	Banana	cytosol	25.89	26.29
CDX96370	Canola	nucleus	22.34	26.27
CDX74756	Canola	nucleus	21.07	25.54
CDX82193	Canola	nucleus, plastid	22.59	25.28
CDY18910	Canola	nucleus	20.81	25.23
CDY03666	Canola	nucleus, plastid	22.59	25.07
GSMUA_Achr10P...	Banana	nucleus	25.38	24.75

Protein Annotations

MapMan:15.5.19	UniProt:A0A078HRL4	EnsemblPlants:CDY39914	ProteinID:CDY39914	ProteinID:CDY39914.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00068770001	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF64	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0004EE5813	SEG:seg

Description

BnaA09g14960DBnaA09g14960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRL4]

Coordinates

chrLK032460:+:123729..125361

Molecular Weight (calculated)

41433.6 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.696

Length

394 amino acids

Sequence
(BLAST)

001: MDLSDDGAAA RGGSRHLVDP SLSIVPRSTP PEDPTTSSPA AAAATTSEVV TKRSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ
101: QAEPAIVAAT GTGTIPANFS SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQHQQ QQHHQQAPAE TIPGPDGESF
201: SRKRYRSVDS SKEDGEGKQN ENKSLKESEP PAAATGAPMW AVAPTNRSAG GNTFWMLPVP TTAAGNQPAA MESSSNASRA HMWPFGGGGA GAGGGGATHF
301: MAGTGFSFPM DQYRGSPLQL GSFLAQPQQP NQNIGLSMPD SNLGVLAALN AAYPRGGNAN AEQVNNAVEH QEKQQPQQSD QDDDSRDENS NSDG

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.